Detailed information NTG0386008

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HHJ62_RS08570
• Genome accession: NZ_CP051636
• Coordinates: 1801596..1803014 (-)
• Length: 472 a.a.
• NCBI ID: WP_035687996.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain ADL-AP17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1796596..1808014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ62_RS08560 (HHJ62_08560)	glpT	1798404..1799849 (+)	1446	WP_046097260.1	glycerol-3-phosphate transporter	-
HHJ62_RS08565 (HHJ62_08565)	glpQ	1799943..1801037 (+)	1095	WP_035687993.1	glycerophosphodiester phosphodiesterase	-
HHJ62_RS08570 (HHJ62_08570)	pilA	1801596..1803014 (-)	1419	WP_035687996.1	signal recognition particle-docking protein FtsY	Machinery gene
HHJ62_RS08575 (HHJ62_08575)	rsmD	1803170..1803778 (+)	609	WP_046097259.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HHJ62_RS08580 (HHJ62_08580)	dprA	1803775..1804875 (-)	1101	WP_035687998.1	DNA-processing protein DprA	Machinery gene
HHJ62_RS08585 (HHJ62_08585)	pilF/pilF2	1805020..1805562 (-)	543	WP_017805302.1	type IV pilus biogenesis/stability protein PilW	Machinery gene
HHJ62_RS08590 (HHJ62_08590)	-	1805596..1806765 (-)	1170	WP_035688001.1	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 52137.57 Da
• Isoelectric Point: 4.2922

>NTDB_id=386008 HHJ62_RS08570 WP_035687996.1 1801596..1803014(-) (pilA) [Avibacterium paragallinarum strain ADL-AP17]
MTEKNKKGGFWSWFGLGKKKEEAVEPSLLQENAEEINVSQTEIPSEQSAVENSQGFEQETETLTQAEISSEQSAVENPQG
FEQETESLTQIDITPEQSAVEISQDFEQEEESLTQTDITPEQSAVENPQDFEQETESLTQIEITPEQSEAENPQPAEKEK
PSKGGFFSRLVKGLIRTKQNIGSGFLSLFSGKKIDDDLFEELEEQLLIADIGMPTTTKIINNLTQHASRKQLKEADLLYQ
QLKAELADIIKPVAQPLQIDSSKKPYVILMVGVNGVGKTTTIGKLARQFQMQGKSVMLAAGDTFRAAAVEQLQVWGERNH
IPVIAQNTGADSASVIYDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAI
SQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGIGEKIEDLRPFQAEEFIEALFSKELETQ

Nucleotide

• Length: 1419 bp

>NTDB_id=386008 HHJ62_RS08570 WP_035687996.1 1801596..1803014(-) (pilA) [Avibacterium paragallinarum strain ADL-AP17]
ATGACAGAAAAAAATAAAAAAGGCGGATTTTGGTCTTGGTTTGGCTTAGGTAAAAAGAAAGAAGAAGCGGTAGAGCCTAG
TTTATTGCAAGAAAATGCGGAAGAAATCAACGTTTCACAAACAGAAATCCCCTCAGAACAAAGTGCGGTGGAAAATTCAC
AAGGTTTTGAGCAAGAAACGGAAACTCTAACGCAAGCTGAAATTTCCTCAGAGCAAAGTGCGGTAGAAAATCCGCAAGGT
TTTGAGCAAGAAACGGAAAGCCTAACGCAAATCGACATCACGCCAGAGCAAAGTGCGGTAGAAATTTCACAAGATTTTGA
GCAGGAAGAGGAAAGCCTAACGCAAACCGACATCACGCCAGAGCAAAGTGCGGTGGAAAATCCGCAAGATTTTGAGCAAG
AAACGGAAAGCCTAACGCAAATCGAAATCACACCAGAGCAAAGTGAAGCAGAAAATCCACAACCCGCAGAGAAAGAAAAA
CCAAGCAAAGGGGGCTTTTTCAGTCGCTTAGTGAAAGGGCTGATTCGCACCAAACAGAATATCGGTTCGGGCTTTTTGAG
CCTATTTTCAGGTAAGAAAATTGATGATGATCTGTTTGAAGAATTAGAAGAACAGTTGCTCATCGCCGATATTGGAATGC
CGACAACAACCAAGATTATCAATAATTTAACTCAACACGCCAGCCGCAAACAGCTAAAAGAGGCAGATTTGTTGTATCAA
CAGCTTAAAGCGGAGCTTGCAGATATTATTAAGCCTGTCGCACAGCCGCTGCAAATTGATAGCAGCAAAAAGCCTTATGT
GATTTTGATGGTGGGCGTAAATGGCGTGGGCAAAACTACCACCATTGGCAAACTTGCACGTCAATTCCAAATGCAAGGCA
AATCGGTGATGTTAGCCGCTGGGGATACTTTCCGTGCCGCCGCCGTAGAACAGCTACAAGTGTGGGGGGAACGCAATCAT
ATTCCTGTTATCGCTCAAAACACGGGGGCGGATTCTGCTTCCGTGATTTATGACGCAATGCAATCAGCCGCGGCGAGAAA
TATTGACATTTTAATCGCCGATACCGCAGGGCGTTTGCAAAATAAAAATAACTTAATGGACGAGCTGAAAAAAATCGTGC
GAGTGATGAAAAAATACGATGAAACCGCACCGCACGAAATTATGCTGACCCTTGACGCGGGTACAGGGCAAAACGCCATC
AGCCAAGCGAAATTATTCCACGAAGCCGTAGGGCTAACGGGGATTAGCTTAACGAAACTTGACGGCACGGCAAAAGGCGG
GGTGATTTTCGCCATCGCAGATCAATTTAAATTGCCGATTCGCTATATTGGTATCGGTGAAAAAATTGAAGACCTCCGCC
CATTCCAAGCGGAAGAATTTATTGAGGCTTTATTTAGTAAAGAATTGGAAACTCAATAG

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (182-246)

• SRP54-type protein, GTPase domain (SRP54) (266-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	43.914	88.771	0.39