Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HHJ62_RS08580 Genome accession   NZ_CP051636
Coordinates   1803775..1804875 (-) Length   366 a.a.
NCBI ID   WP_035687998.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1798775..1809875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ62_RS08565 (HHJ62_08565) glpQ 1799943..1801037 (+) 1095 WP_035687993.1 glycerophosphodiester phosphodiesterase -
  HHJ62_RS08570 (HHJ62_08570) pilA 1801596..1803014 (-) 1419 WP_035687996.1 signal recognition particle-docking protein FtsY Machinery gene
  HHJ62_RS08575 (HHJ62_08575) rsmD 1803170..1803778 (+) 609 WP_046097259.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HHJ62_RS08580 (HHJ62_08580) dprA 1803775..1804875 (-) 1101 WP_035687998.1 DNA-processing protein DprA Machinery gene
  HHJ62_RS08585 (HHJ62_08585) pilF/pilF2 1805020..1805562 (-) 543 WP_017805302.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HHJ62_RS08590 (HHJ62_08590) - 1805596..1806765 (-) 1170 WP_035688001.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  HHJ62_RS08595 (HHJ62_08595) - 1807140..1808192 (-) 1053 WP_035688003.1 AI-2E family transporter -
  HHJ62_RS08600 (HHJ62_08600) glnB 1808195..1808533 (-) 339 WP_017805299.1 nitrogen regulatory protein P-II -
  HHJ62_RS08605 (HHJ62_08605) mog 1808562..1809140 (-) 579 WP_035688005.1 molybdopterin adenylyltransferase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40877.67 Da        Isoelectric Point: 4.8599

>NTDB_id=386009 HHJ62_RS08580 WP_035687998.1 1803775..1804875(-) (dprA) [Avibacterium paragallinarum strain ADL-AP17]
MITNEMLLRLLQIPKLGANTIQKILGEISLTQLLDYDEYAFKQIGWSEKQIQRWFYPERKFIDPALQWAESAGNFLLNFT
DEDYPYLLKQIPSAPPILFLQGNLTALSQPQIAIVGSRYCSNYGEYWAKYFASELSLAGFAITSGLALGIDGFCHQAVVD
IQGQTLAVLGSGLDKVYPAKHRRLAEQIIEHNGTLISEFLPAQAPVAENFPRRNRIISGLSLGTLIIEATERSGSLITAR
YALEQNREIFALPGNIQNGFSEGCHKLIKQGATLVESVTDILENLPHYQYVTPNYTEQKSPSSANEQLTSEPPSYPELYA
QLSHIPISLDELSARLSLPIDVLLTQLLSLELQQLAVCENGLYRRS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=386009 HHJ62_RS08580 WP_035687998.1 1803775..1804875(-) (dprA) [Avibacterium paragallinarum strain ADL-AP17]
ATGATAACCAATGAGATGTTACTCCGTTTGCTCCAAATTCCTAAACTTGGAGCAAATACCATTCAAAAAATATTGGGTGA
AATTAGTCTTACACAGCTTTTAGATTATGATGAATACGCGTTTAAACAGATTGGTTGGTCAGAAAAGCAAATTCAACGTT
GGTTTTACCCAGAACGAAAATTCATTGATCCTGCGTTACAATGGGCAGAAAGTGCGGGTAATTTTTTGCTTAATTTTACC
GATGAAGATTACCCTTATTTGCTGAAGCAAATTCCCTCCGCCCCGCCGATTTTATTTTTGCAAGGAAATTTGACCGCACT
TTCTCAACCACAAATTGCAATAGTAGGTAGCCGTTATTGCTCGAATTATGGGGAATATTGGGCGAAGTATTTTGCTTCAG
AGTTGAGTCTTGCGGGCTTTGCGATAACCAGTGGACTAGCTTTAGGGATCGACGGATTTTGTCATCAAGCCGTGGTGGAT
ATTCAAGGGCAAACGCTGGCGGTGCTTGGAAGTGGGTTGGATAAGGTGTATCCTGCAAAACATCGCCGTTTGGCTGAGCA
AATTATTGAGCATAACGGCACATTGATTTCCGAATTTCTCCCCGCGCAAGCGCCCGTTGCGGAGAATTTCCCACGCCGAA
ACCGTATTATTAGCGGGCTTTCGCTTGGCACGCTAATTATTGAAGCCACCGAGCGGAGCGGTTCACTCATTACGGCTCGT
TATGCGTTGGAGCAAAACCGTGAGATCTTTGCCTTGCCGGGCAATATTCAAAATGGCTTTAGTGAGGGCTGTCATAAGCT
CATCAAACAAGGGGCGACATTAGTGGAGAGCGTGACGGATATTTTAGAAAATCTCCCACATTATCAGTATGTTACACCGA
ATTATACCGAACAGAAATCGCCATCGTCGGCGAACGAGCAGCTAACTTCAGAGCCACCAAGTTATCCCGAACTTTACGCT
CAATTAAGCCACATTCCCATTAGCCTTGATGAACTTTCAGCCCGTTTGTCATTGCCGATTGATGTCTTATTAACCCAATT
ATTAAGTTTAGAATTGCAACAATTAGCGGTTTGTGAAAATGGGCTGTATCGGCGAAGTTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

62.973

100

0.637
  dprA Glaesserella parasuis strain SC1401

57.02

95.355

0.544
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.443

100

0.434
  dprA Vibrio cholerae strain A1552

43.443

100

0.434
  dprA Vibrio campbellii strain DS40M4

42.061

98.087

0.413
  dprA Legionella pneumophila strain ERS1305867

40.437

100

0.404