Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HHJ62_RS05995 Genome accession   NZ_CP051636
Coordinates   1277217..1279049 (-) Length   610 a.a.
NCBI ID   WP_035685730.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1272217..1284049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ62_RS05970 (HHJ62_05970) - 1272438..1273055 (-) 618 WP_035685722.1 riboflavin synthase -
  HHJ62_RS05975 (HHJ62_05975) - 1273138..1274532 (+) 1395 WP_035685725.1 MATE family efflux transporter -
  HHJ62_RS05980 (HHJ62_05980) - 1274542..1275585 (+) 1044 WP_046097412.1 Gfo/Idh/MocA family oxidoreductase -
  HHJ62_RS05985 (HHJ62_05985) rplY 1276032..1276319 (-) 288 WP_017805712.1 50S ribosomal protein L25 -
  HHJ62_RS05990 (HHJ62_05990) - 1276560..1277168 (+) 609 WP_017805714.1 DedA family protein -
  HHJ62_RS05995 (HHJ62_05995) uvrC 1277217..1279049 (-) 1833 WP_035685730.1 excinuclease ABC subunit UvrC Machinery gene
  HHJ62_RS06000 (HHJ62_06000) - 1279373..1280086 (+) 714 WP_035686008.1 ABC transporter ATP-binding protein -
  HHJ62_RS06005 (HHJ62_06005) - 1280086..1280841 (+) 756 WP_046097413.1 ABC transporter permease -
  HHJ62_RS06010 (HHJ62_06010) - 1280850..1281794 (+) 945 WP_035685733.1 ABC transporter substrate-binding protein -
  HHJ62_RS06015 (HHJ62_06015) kdsB 1282084..1282866 (-) 783 WP_035685736.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HHJ62_RS06020 (HHJ62_06020) - 1282863..1283045 (-) 183 WP_035685738.1 Trm112 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69110.18 Da        Isoelectric Point: 9.6930

>NTDB_id=385995 HHJ62_RS05995 WP_035685730.1 1277217..1279049(-) (uvrC) [Avibacterium paragallinarum strain ADL-AP17]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQGLNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRSVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGIEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFQQ
LKVKWDKKRPHLIGVAKGVDRRAGLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=385995 HHJ62_RS05995 WP_035685730.1 1277217..1279049(-) (uvrC) [Avibacterium paragallinarum strain ADL-AP17]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGATGCGAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCGAGCTATTTTCGTCGCAATGTGTCGAGTAAAAAAA
CGGAAGCTTTAGTGGCAGCCATTCATCGCATTGAAACCACCATCACTTCAAGCGAAACAGAAGCCTTGCTACTCGAGCAT
AACTACATCAAAACCTACCAGCCGCGTTATAACGTATTGTTGCGTGATGATAAATCTTACCCCTACATTCTTCTCACCAA
AGAACGCCACCCTAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACCCTATCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCTCGCCTTTTTTTGCAAGGCAAGGATCAGCAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGGGTTAAATTTTGAAGAAGCAGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTAATCGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGACATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTACAAGT
GCTGTTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGTTATTTTCCAAAAGTGCCAGCCAATACGGATTTATCCGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAAGCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGCAAATATTTGCAACTGGCACAAATGAATGCCCAAGCGGCGTTGGTTACCCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCATTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGCGAACAAACCATCGCTTCTTGCGTGGTGTTTAATCAAGATGGGCCGCTGAAATCTGATTATCGCCGTTT
TAATATCACCGGCATTACAGGCGGTGATGATTATGCCGCAATGGAGCAAGCCTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTAATCTTTATTGACGGTGGCAAAGGACAGCTTAACCGAGCCTTACAAGTGTTCCAACAG
CTCAAGGTAAAATGGGACAAAAAACGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCAGGCTTGGAAAC
GCTCATCATCAGCAAGCAAGATCGCGAAATCAACTTGCCGCCAGACAGCCTTGCCTTGCACCTAATCCAACATATCCGTG
ATGAAAGCCATAACCACGCCATCAGCGGACACCGCAAAAAACGCCAAAAAGCCTTCACCCAAAGCGGATTAGAAACTATC
GAAGGCGTTGGCGCAAAACGTCGTCAAGCCCTATTGAAATACCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrB/uvrC motif (UVR)

(203-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.937

98.525

0.374
  uvrC Streptococcus pneumoniae R6

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae D39

37.604

98.525

0.37