Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   F0T12_RS06180 Genome accession   NZ_CP043812
Coordinates   1180956..1181351 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1176906..1188148 1180956..1181351 within 0


Gene organization within MGE regions


Location: 1176906..1188148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS12530 - 1176906..1177502 (-) 597 WP_012503916.1 TIGR02391 family protein -
  F0T12_RS12535 - 1177692..1178549 (-) 858 WP_012503917.1 ATP-binding protein -
  F0T12_RS06160 (F0T12_06880) - 1178563..1178997 (-) 435 WP_229684538.1 DNA cytosine methyltransferase -
  F0T12_RS06165 (F0T12_06885) - 1178931..1179521 (-) 591 WP_080229150.1 DNA cytosine methyltransferase -
  F0T12_RS06170 (F0T12_06890) - 1179896..1180042 (+) 147 WP_003691757.1 hypothetical protein -
  F0T12_RS06175 (F0T12_06900) comP 1180419..1180868 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  F0T12_RS06180 (F0T12_06905) comE 1180956..1181351 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  F0T12_RS12540 (F0T12_06910) - 1181456..1181572 (-) 117 Protein_1223 competence protein ComE -
  F0T12_RS06210 (F0T12_06940) - 1187197..1187850 (-) 654 Protein_1224 TIGR01621 family pseudouridine synthase -
  F0T12_RS06215 (F0T12_06945) - 1187804..1188148 (-) 345 WP_003691787.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=385920 F0T12_RS06180 WP_003703428.1 1180956..1181351(-) (comE) [Neisseria gonorrhoeae strain NG290]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=385920 F0T12_RS06180 WP_003703428.1 1180956..1181351(-) (comE) [Neisseria gonorrhoeae strain NG290]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment