Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F0T12_RS02315 Genome accession   NZ_CP043812
Coordinates   448319..448981 (+) Length   220 a.a.
NCBI ID   WP_164824764.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443319..453981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS02290 (F0T12_02570) cysT 443446..444282 (-) 837 WP_164824763.1 sulfate ABC transporter permease subunit CysT -
  F0T12_RS02295 (F0T12_02575) - 444463..444795 (+) 333 WP_003687908.1 hypothetical protein -
  F0T12_RS02300 (F0T12_02580) - 445122..445631 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  F0T12_RS02305 (F0T12_02590) - 445861..446441 (-) 581 Protein_451 superoxide dismutase -
  F0T12_RS02310 (F0T12_02600) dnaB 446605..448011 (+) 1407 WP_047951438.1 replicative DNA helicase -
  F0T12_RS02315 (F0T12_02605) pilH 448319..448981 (+) 663 WP_164824764.1 GspH/FimT family pseudopilin Machinery gene
  F0T12_RS02320 (F0T12_02610) pilI 449013..449627 (+) 615 WP_164824765.1 type IV pilus modification protein PilV Machinery gene
  F0T12_RS02325 (F0T12_02615) pilJ 449624..450607 (+) 984 WP_164824766.1 PilW family protein Machinery gene
  F0T12_RS02330 (F0T12_02620) pilK 450586..451194 (+) 609 WP_164824767.1 pilus assembly PilX family protein Machinery gene
  F0T12_RS02335 (F0T12_02625) pilL 451196..451669 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T12_RS02340 (F0T12_02635) - 452281..452726 (-) 446 Protein_458 AzlC family ABC transporter permease -
  F0T12_RS02345 (F0T12_02640) dut 452892..453344 (+) 453 WP_050303745.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24524.96 Da        Isoelectric Point: 9.6166

>NTDB_id=385904 F0T12_RS02315 WP_164824764.1 448319..448981(+) (pilH) [Neisseria gonorrhoeae strain NG290]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=385904 F0T12_RS02315 WP_164824764.1 448319..448981(+) (pilH) [Neisseria gonorrhoeae strain NG290]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

97.273

100

0.973

Multiple sequence alignment