Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   HHM65_RS04110 Genome accession   NZ_CP051624
Coordinates   776299..779523 (+) Length   1074 a.a.
NCBI ID   WP_015057478.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 771299..784523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM65_RS04085 (HHM65_04090) - 772509..772886 (+) 378 WP_015057473.1 OsmC family protein -
  HHM65_RS04090 (HHM65_04095) - 772879..773265 (+) 387 WP_015057474.1 DUF1722 domain-containing protein -
  HHM65_RS04095 (HHM65_04100) - 773338..774414 (+) 1077 WP_015057475.1 ABC transporter permease -
  HHM65_RS04100 (HHM65_04105) - 774424..775092 (+) 669 WP_170078163.1 ABC transporter ATP-binding protein -
  HHM65_RS04105 (HHM65_04110) - 775186..776124 (-) 939 WP_015057477.1 neutral zinc metallopeptidase -
  HHM65_RS04110 (HHM65_04115) rexB 776299..779523 (+) 3225 WP_015057478.1 ATP-dependent nuclease subunit B Machinery gene
  HHM65_RS04115 (HHM65_04120) rexA 779523..783152 (+) 3630 WP_206151245.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HHM65_RS04120 (HHM65_04125) - 783312..784427 (+) 1116 WP_015057479.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123488.43 Da        Isoelectric Point: 5.2453

>NTDB_id=385908 HHM65_RS04110 WP_015057478.1 776299..779523(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLNLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEVREAVFSSLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KSLGQNELEIEKNEEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALHVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQLGPDDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=385908 HHM65_RS04110 WP_015057478.1 776299..779523(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGAACTTGCTACCAGAACGAG
GGTCCTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCAATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCGTTGATGTCCTTTGCTAAAACCATTGAAACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAACAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAGCCATGATTTTTCTCAAGTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTACCTCTGGCAAAGTCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAACCTGCTCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGATATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCATTAGAGTTGTTAAACGAGGTAAGAGAAGCTGTTTTTTCTTCGTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAGCCTGGGCCAAAATGAGCTAGAAATCGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGGCGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCCCATTTTCCAAAGCAAGTCAAAGAGACAGGGCTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCGCTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCAGTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTAGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACGGTTGCCCTTCGCTATCTCCGACGACAATTAAGACATCATCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAAGTTATTGAGGCACGTTTTCCAAGCGATAGACCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGGCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATACATCTATCAAGACAGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TCAGTCGACAAGAAGAACCTTTTGCCCTTCACGTGACAGATCAGGTAGTAGTCCATGGGATAATTGACCGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAACTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTAGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.518

100

0.434

Multiple sequence alignment