Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   F0T12_RS02330 Genome accession   NZ_CP043812
Coordinates   450586..451194 (+) Length   202 a.a.
NCBI ID   WP_164824767.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445586..456194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS02305 (F0T12_02590) - 445861..446441 (-) 581 Protein_451 superoxide dismutase -
  F0T12_RS02310 (F0T12_02600) dnaB 446605..448011 (+) 1407 WP_047951438.1 replicative DNA helicase -
  F0T12_RS02315 (F0T12_02605) pilH 448319..448981 (+) 663 WP_164824764.1 GspH/FimT family pseudopilin Machinery gene
  F0T12_RS02320 (F0T12_02610) pilI 449013..449627 (+) 615 WP_164824765.1 type IV pilus modification protein PilV Machinery gene
  F0T12_RS02325 (F0T12_02615) pilJ 449624..450607 (+) 984 WP_164824766.1 PilW family protein Machinery gene
  F0T12_RS02330 (F0T12_02620) pilK 450586..451194 (+) 609 WP_164824767.1 pilus assembly PilX family protein Machinery gene
  F0T12_RS02335 (F0T12_02625) pilL 451196..451669 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T12_RS02340 (F0T12_02635) - 452281..452726 (-) 446 Protein_458 AzlC family ABC transporter permease -
  F0T12_RS02345 (F0T12_02640) dut 452892..453344 (+) 453 WP_050303745.1 dUTP diphosphatase -
  F0T12_RS02350 (F0T12_02645) dapC 453422..454609 (+) 1188 WP_164823235.1 succinyldiaminopimelate transaminase -
  F0T12_RS02355 (F0T12_02650) yaaA 454920..455699 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22107.91 Da        Isoelectric Point: 5.0891

>NTDB_id=385907 F0T12_RS02330 WP_164824767.1 450586..451194(+) (pilK) [Neisseria gonorrhoeae strain NG290]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNQGVEYEKGTGNVSKMPR
YIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=385907 F0T12_RS02330 WP_164824767.1 450586..451194(+) (pilK) [Neisseria gonorrhoeae strain NG290]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGT
TATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.955

Multiple sequence alignment