Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPSJM_RS07255 | Genome accession | NC_014560 |
| Coordinates | 1513479..1514054 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203654.1 | Uniprot ID | - |
| Organism | Helicobacter pylori SJM180 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1508479..1519054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSJM_RS07245 (HPSJM_07500) | - | 1510195..1511409 (-) | 1215 | WP_000580066.1 | restriction endonuclease subunit S | - |
| HPSJM_RS07250 (HPSJM_07505) | - | 1511406..1513445 (-) | 2040 | WP_000879235.1 | class I SAM-dependent DNA methyltransferase | - |
| HPSJM_RS07255 (HPSJM_07510) | comFC | 1513479..1514054 (-) | 576 | WP_001203654.1 | ComF family protein | Machinery gene |
| HPSJM_RS07260 (HPSJM_07515) | tmk | 1514042..1514617 (-) | 576 | WP_000289722.1 | dTMP kinase | - |
| HPSJM_RS07265 (HPSJM_07520) | coaD | 1514619..1515092 (-) | 474 | WP_001169277.1 | pantetheine-phosphate adenylyltransferase | - |
| HPSJM_RS07270 (HPSJM_07525) | - | 1515092..1515655 (-) | 564 | WP_000780108.1 | UbiX family flavin prenyltransferase | - |
| HPSJM_RS07275 (HPSJM_07535) | flgA | 1515665..1516321 (-) | 657 | WP_000699038.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPSJM_RS07280 (HPSJM_07540) | uvrD | 1516318..1518363 (-) | 2046 | WP_000505309.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21382.96 Da Isoelectric Point: 9.0907
>NTDB_id=38590 HPSJM_RS07255 WP_001203654.1 1513479..1514054(-) (comFC) [Helicobacter pylori SJM180]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=38590 HPSJM_RS07255 WP_001203654.1 1513479..1514054(-) (comFC) [Helicobacter pylori SJM180]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAACCCCTTTGCTCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAACCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTTAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCACTTTGCGATTGCGCTTTG
CAGCGCGGACGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAACCCCTTTGCTCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAACCCACTTATGGGACTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACCTTTAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCACTTTGCGATTGCGCTTTG
CAGCGCGGACGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |