Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   F1537_RS09245 Genome accession   NZ_CP043770
Coordinates   1805663..1806379 (+) Length   238 a.a.
NCBI ID   WP_013526182.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE7/F1946     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800663..1811379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1537_RS09225 (F1537_09235) - 1801602..1802132 (-) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  F1537_RS09230 (F1537_09240) nrfE 1802132..1804039 (-) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1537_RS09235 (F1537_09245) suhB 1804148..1804951 (-) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1537_RS09240 (F1537_09250) comN 1805151..1805663 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1537_RS09245 (F1537_09255) comO 1805663..1806379 (+) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1537_RS09250 (F1537_09260) comP 1806394..1807077 (+) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1537_RS09255 (F1537_09265) comQ 1807070..1807357 (+) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  F1537_RS09260 (F1537_09270) recC 1807403..1810783 (+) 3381 WP_041174963.1 exodeoxyribonuclease V subunit gamma -
  F1537_RS09265 (F1537_09275) nrdR 1810838..1811287 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26711.06 Da        Isoelectric Point: 9.5508

>NTDB_id=385790 F1537_RS09245 WP_013526182.1 1805663..1806379(+) (comO) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHILLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNIGYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=385790 F1537_RS09245 WP_013526182.1 1805663..1806379(+) (comO) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATACTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCGGTTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment