Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPPC_RS06965 Genome accession   NC_014555
Coordinates   1437495..1438070 (-) Length   191 a.a.
NCBI ID   WP_001203648.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432495..1443070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS08550 - 1433362..1433439 (-) 78 Protein_1351 restriction endonuclease subunit R -
  HPPC_RS06945 (HPPC_07200) - 1433666..1433827 (+) 162 WP_228841233.1 hypothetical protein -
  HPPC_RS06950 (HPPC_07205) - 1433824..1434831 (+) 1008 WP_001210995.1 DNA adenine methylase -
  HPPC_RS06955 (HPPC_07210) - 1434835..1435974 (+) 1140 WP_001049131.1 DNA methyltransferase -
  HPPC_RS06960 (HPPC_07215) - 1436037..1437485 (+) 1449 WP_001222933.1 hypothetical protein -
  HPPC_RS06965 (HPPC_07220) comFC 1437495..1438070 (-) 576 WP_001203648.1 ComF family protein Machinery gene
  HPPC_RS06970 (HPPC_07225) tmk 1438058..1438633 (-) 576 WP_000289053.1 dTMP kinase -
  HPPC_RS06975 (HPPC_07230) coaD 1438635..1439108 (-) 474 WP_001169230.1 pantetheine-phosphate adenylyltransferase -
  HPPC_RS06980 (HPPC_07235) - 1439108..1439671 (-) 564 WP_000780097.1 UbiX family flavin prenyltransferase -
  HPPC_RS06985 (HPPC_07245) flgA 1439681..1440337 (-) 657 WP_000699037.1 flagellar basal body P-ring formation chaperone FlgA -
  HPPC_RS06990 (HPPC_07250) uvrD 1440334..1442379 (-) 2046 WP_000345158.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21195.80 Da        Isoelectric Point: 9.4455

>NTDB_id=38570 HPPC_RS06965 WP_001203648.1 1437495..1438070(-) (comFC) [Helicobacter pylori PeCan4]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKGKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=38570 HPPC_RS06965 WP_001203648.1 1437495..1438070(-) (comFC) [Helicobacter pylori PeCan4]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAGGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948

Multiple sequence alignment