Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPPC_RS01650 Genome accession   NC_014555
Coordinates   334025..334429 (+) Length   134 a.a.
NCBI ID   WP_000599162.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 329025..339429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC_RS01615 (HPPC_01665) - 329198..330136 (-) 939 WP_000833935.1 tetraacyldisaccharide 4'-kinase -
  HPPC_RS01620 (HPPC_01670) - 330133..330915 (-) 783 WP_001168212.1 NAD+ synthase -
  HPPC_RS01630 (HPPC_01675) ilvC 331164..332156 (+) 993 WP_001207749.1 ketol-acid reductoisomerase -
  HPPC_RS01635 (HPPC_01680) minD 332180..332986 (+) 807 WP_001019031.1 septum site-determining protein MinD -
  HPPC_RS01640 (HPPC_01685) minE 332983..333216 (+) 234 WP_000051431.1 cell division topological specificity factor MinE -
  HPPC_RS01645 (HPPC_01690) dprA 333228..334028 (+) 801 WP_000841116.1 DNA-processing protein DprA Machinery gene
  HPPC_RS01650 (HPPC_01695) dprB 334025..334429 (+) 405 WP_000599162.1 Holliday junction resolvase RuvX Machinery gene
  HPPC_RS01655 (HPPC_01705) - 334561..335241 (+) 681 WP_000840151.1 tetratricopeptide repeat protein -
  HPPC_RS01660 (HPPC_01715) - 335435..335773 (+) 339 WP_000699919.1 hypothetical protein -
  HPPC_RS01665 (HPPC_01720) - 335757..336317 (+) 561 WP_000037140.1 hypothetical protein -
  HPPC_RS08620 - 336329..336640 (+) 312 Protein_321 glycoside hydrolase family protein -
  HPPC_RS08625 - 336743..337010 (+) 268 Protein_322 lysozyme -
  HPPC_RS01675 - 337268..337411 (+) 144 Protein_323 DUF1294 domain-containing protein -
  HPPC_RS01680 - 337411..338196 (+) 786 WP_041199514.1 hypothetical protein -
  HPPC_RS01685 (HPPC_01735) - 338186..339280 (+) 1095 WP_000426633.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15208.69 Da        Isoelectric Point: 9.1725

>NTDB_id=38563 HPPC_RS01650 WP_000599162.1 334025..334429(+) (dprB) [Helicobacter pylori PeCan4]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACGILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=38563 HPPC_RS01650 WP_000599162.1 334025..334429(+) (dprB) [Helicobacter pylori PeCan4]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment