Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG574_RS05575 Genome accession   NZ_CP051541
Coordinates   1188244..1189017 (+) Length   257 a.a.
NCBI ID   WP_202144604.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1183244..1194017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS05570 (HG574_05560) hopL 1184523..1188230 (+) 3708 WP_202144603.1 Hop family outer membrane protein HopL -
  HG574_RS05575 (HG574_05565) proC 1188244..1189017 (+) 774 WP_202144604.1 pyrroline-5-carboxylate reductase Machinery gene
  HG574_RS05580 (HG574_05570) - 1189045..1189578 (+) 534 WP_000549892.1 Fic/DOC family protein -
  HG574_RS05585 (HG574_05575) ybeY 1189823..1190245 (-) 423 WP_202144605.1 rRNA maturation RNase YbeY -
  HG574_RS05590 (HG574_05580) - 1190301..1190795 (-) 495 WP_021176106.1 flavodoxin -
  HG574_RS05595 (HG574_05585) - 1190886..1191467 (-) 582 WP_120889466.1 DedA family protein -
  HG574_RS05600 (HG574_05590) ccoS 1191595..1191786 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG574_RS05605 (HG574_05595) - 1191810..1192784 (+) 975 WP_202144606.1 NAD(P)/FAD-dependent oxidoreductase -
  HG574_RS05610 (HG574_05600) - 1192791..1193951 (-) 1161 WP_202144607.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28170.92 Da        Isoelectric Point: 8.8674

>NTDB_id=385485 HG574_RS05575 WP_202144604.1 1188244..1189017(+) (proC) [Helicobacter pylori strain LIM-001]
MEILQFIGYGNMAQAILEGTHEILSKRFILEVTGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSDAINSLHYLKCMPNIASKFALSSTAVCEKSVAPLISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKIRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=385485 HG574_RS05575 WP_202144604.1 1188244..1189017(+) (proC) [Helicobacter pylori strain LIM-001]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCACTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGGTTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGACAAGCCAAAAGCGTTTTGAGCGCTTTAGCCGGGGTAAATTTTGAAGCTTTAAGTGATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTTAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGATGCCGGTATTAGGGA
GGGTTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTGAAAAAAATACGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362

Multiple sequence alignment