Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0Y79_RS04670 Genome accession   NZ_CP043615
Coordinates   934697..935263 (+) Length   188 a.a.
NCBI ID   WP_013726868.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri strain MGB0786     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 929697..940263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Y79_RS04650 gyrA 929705..932272 (+) 2568 WP_041805519.1 DNA gyrase subunit A -
  F0Y79_RS04655 - 932458..933567 (+) 1110 WP_013726865.1 lactate oxidase -
  F0Y79_RS04660 - 933773..933964 (-) 192 WP_013726866.1 hypothetical protein -
  F0Y79_RS04665 rpsF 934366..934662 (+) 297 WP_013726867.1 30S ribosomal protein S6 -
  F0Y79_RS04670 ssb 934697..935263 (+) 567 WP_013726868.1 single-stranded DNA-binding protein Machinery gene
  F0Y79_RS04675 rpsR 935300..935539 (+) 240 WP_013726869.1 30S ribosomal protein S18 -
  F0Y79_RS04680 - 935641..936735 (-) 1095 Protein_844 Na+/H+ antiporter NhaC family protein -
  F0Y79_RS04685 - 936741..937250 (-) 510 Protein_845 IS5 family transposase -
  F0Y79_RS04690 - 937294..938223 (-) 930 WP_013727131.1 IS30-like element ISLpl1 family transposase -
  F0Y79_RS04695 - 938321..938575 (-) 255 Protein_847 transposase -
  F0Y79_RS04700 - 938626..938961 (-) 336 Protein_848 Na+/H+ antiporter NhaC -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20304.58 Da        Isoelectric Point: 4.7146

>NTDB_id=385485 F0Y79_RS04670 WP_013726868.1 934697..935263(+) (ssb) [Lentilactobacillus buchneri strain MGB0786]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANPFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=385485 F0Y79_RS04670 WP_013726868.1 934697..935263(+) (ssb) [Lentilactobacillus buchneri strain MGB0786]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGCCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATCCATTTGATAATC
ATTCAAATGCCGGTACCGGAAATAGTGGCAATTCCAACAATAACGGCGGGAATAATCCGACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.886

100

0.553

Multiple sequence alignment