Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMV_RS05710 Genome accession   NC_017501
Coordinates   1166364..1167041 (+) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis 8013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161364..1172041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS05685 (NMV_1148) - 1161643..1162104 (-) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -
  NMV_RS05690 (NMV_1149) leuD 1162169..1162810 (-) 642 WP_002233927.1 3-isopropylmalate dehydratase small subunit -
  NMV_RS05695 (NMV_1150) - 1162872..1163126 (-) 255 WP_002213442.1 hypothetical protein -
  NMV_RS05700 (NMV_1151) leuC 1163223..1164632 (-) 1410 WP_002232521.1 3-isopropylmalate dehydratase large subunit -
  NMV_RS05705 (NMV_1152) gshA 1164892..1166241 (+) 1350 WP_014573993.1 glutamate--cysteine ligase -
  NMV_RS05710 (NMV_1153) ysxA/radC 1166364..1167041 (+) 678 WP_002222553.1 RadC family protein Machinery gene
  NMV_RS05715 (NMV_1154) - 1167114..1167839 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMV_RS16090 - 1167862..1167990 (-) 129 WP_009347251.1 hypothetical protein -
  NMV_RS05720 (NMV_1155) - 1167992..1169272 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  NMV_RS05725 (NMV_1156) hflX 1169277..1170455 (+) 1179 WP_048813517.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=38547 NMV_RS05710 WP_002222553.1 1166364..1167041(+) (ysxA/radC) [Neisseria meningitidis 8013]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=38547 NMV_RS05710 WP_002222553.1 1166364..1167041(+) (ysxA/radC) [Neisseria meningitidis 8013]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment