Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0T56_RS13135 Genome accession   NZ_CP043611
Coordinates   2917412..2918473 (+) Length   353 a.a.
NCBI ID   WP_068650573.1    Uniprot ID   -
Organism   Paenibacillus antarcticus strain KACC 11469     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2912412..2923473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T56_RS13115 - 2913001..2913993 (+) 993 WP_068650575.1 helix-turn-helix domain-containing protein -
  F0T56_RS24995 - 2914101..2914262 (+) 162 WP_169810121.1 hypothetical protein -
  F0T56_RS13120 - 2914395..2914886 (+) 492 WP_068580276.1 YajQ family cyclic di-GMP-binding protein -
  F0T56_RS13125 pgsA 2915155..2915742 (+) 588 WP_068650723.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F0T56_RS13130 cinA 2915922..2917172 (+) 1251 WP_068650574.1 competence/damage-inducible protein A Machinery gene
  F0T56_RS13135 recA 2917412..2918473 (+) 1062 WP_068650573.1 recombinase RecA Machinery gene
  F0T56_RS13140 - 2918584..2919321 (+) 738 WP_420848775.1 regulatory protein RecX -
  F0T56_RS13145 rny 2919635..2921179 (+) 1545 WP_139331637.1 ribonuclease Y -
  F0T56_RS13150 - 2921250..2922044 (+) 795 WP_068650572.1 TIGR00282 family metallophosphoesterase -
  F0T56_RS13155 - 2922132..2922392 (+) 261 WP_068534754.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38201.42 Da        Isoelectric Point: 4.9937

>NTDB_id=385458 F0T56_RS13135 WP_068650573.1 2917412..2918473(+) (recA) [Paenibacillus antarcticus strain KACC 11469]
MSDRRAALDVALRQIEKQFGKGSIMKLGESTHMQVEVTSSGSLALDIALGVGGFPRGRIIEVYGPESSGKTTVALHAIAE
AQKAGGTAAFIDAEHALDPKYASNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVISKSKTTAIFINQLREKIGVMFGNPETTPGGRALKFYATMRLDVRRVESIKNGNDIVGNRT
KIKVVKNKVAPPFKQADVDIMYGLGISKEGGIVDIGTDMDIINKSGAWYSYEGERLGQGRENTKQYLKDHPAVSETIENK
IREASNLTNTFTPPSDSEKEKDELEEQELLEME

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=385458 F0T56_RS13135 WP_068650573.1 2917412..2918473(+) (recA) [Paenibacillus antarcticus strain KACC 11469]
TTGTCAGATCGTCGTGCAGCGCTGGATGTAGCGCTTCGTCAAATAGAGAAACAATTTGGTAAAGGTTCCATTATGAAGTT
AGGTGAGTCAACACACATGCAGGTGGAAGTTACTTCCAGTGGGTCTTTGGCATTGGATATTGCATTGGGTGTAGGTGGAT
TTCCAAGAGGTCGTATCATTGAAGTATATGGTCCTGAATCATCGGGTAAGACAACTGTAGCTCTACATGCAATCGCTGAA
GCTCAGAAGGCTGGCGGAACAGCTGCTTTCATTGATGCTGAGCATGCATTGGATCCTAAATATGCTAGTAATTTGGGCGT
TAATATTGATGAATTACTTCTGTCACAGCCTGATACTGGTGAACAAGCATTAGAGATCGCTGAAGCATTGGTTCGTAGTG
GAGCAGTTGATATTATTGTTATTGACTCAGTTGCTGCTTTGGTACCTAAGGCAGAAATTGAAGGTGAGATGGGTGACTCC
CACATGGGTCTACAAGCTCGTCTGATGTCTCAAGCTCTACGGAAGCTATCAGGTGTTATTAGTAAATCTAAGACCACTGC
GATTTTCATCAACCAGCTTCGTGAGAAGATTGGGGTTATGTTTGGTAATCCTGAGACAACGCCAGGTGGACGGGCCTTGA
AGTTCTATGCCACGATGCGTTTGGATGTACGTAGAGTAGAGAGTATTAAGAACGGGAACGACATTGTAGGTAATCGTACG
AAGATTAAAGTTGTAAAGAACAAAGTAGCGCCACCTTTCAAACAGGCTGACGTTGATATAATGTATGGTCTAGGTATTTC
CAAAGAAGGCGGCATTGTTGATATTGGTACAGATATGGATATTATTAACAAGAGCGGTGCTTGGTACTCTTATGAAGGTG
AACGTTTAGGCCAGGGTAGAGAGAATACAAAGCAATACCTGAAGGATCATCCTGCAGTCTCAGAAACCATTGAGAATAAA
ATTCGGGAAGCTAGCAATTTAACGAATACCTTTACTCCTCCAAGCGATTCAGAGAAAGAAAAAGATGAGTTGGAAGAGCA
AGAATTGTTGGAAATGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.576

93.484

0.725
  recA Latilactobacillus sakei subsp. sakei 23K

71.261

96.601

0.688
  recA Streptococcus pneumoniae D39

65.546

100

0.663
  recA Streptococcus pneumoniae R6

65.546

100

0.663
  recA Streptococcus pneumoniae Rx1

65.546

100

0.663
  recA Streptococcus pneumoniae TIGR4

65.546

100

0.663
  recA Streptococcus mutans UA159

64.789

100

0.652
  recA Streptococcus pyogenes NZ131

70.062

91.785

0.643
  recA Streptococcus mitis SK321

69.846

92.068

0.643
  recA Streptococcus mitis NCTC 12261

69.538

92.068

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.867

94.051

0.629
  recA Acinetobacter baylyi ADP1

62.04

100

0.62
  recA Glaesserella parasuis strain SC1401

61.538

99.433

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

92.635

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

90.935

0.598
  recA Vibrio cholerae strain A1552

65.732

90.935

0.598
  recA Ralstonia pseudosolanacearum GMI1000

67.197

88.952

0.598
  recA Acinetobacter baumannii D1279779

64.024

92.918

0.595
  recA Neisseria gonorrhoeae strain FA1090

62.575

94.618

0.592
  recA Neisseria gonorrhoeae MS11

62.575

94.618

0.592
  recA Neisseria gonorrhoeae MS11

62.575

94.618

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.11

92.918

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

96.317

0.581
  recA Helicobacter pylori 26695

58.79

98.3

0.578
  recA Helicobacter pylori strain NCTC11637

58.501

98.3

0.575
  recA Pseudomonas stutzeri DSM 10701

60.606

93.484

0.567

Multiple sequence alignment