Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   F0T56_RS13130 Genome accession   NZ_CP043611
Coordinates   2915922..2917172 (+) Length   416 a.a.
NCBI ID   WP_068650574.1    Uniprot ID   A0A168MTV0
Organism   Paenibacillus antarcticus strain KACC 11469     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2910922..2922172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T56_RS13105 - 2911730..2911987 (+) 258 WP_068650577.1 DUF3243 domain-containing protein -
  F0T56_RS13110 - 2912179..2912955 (+) 777 WP_068650576.1 DUF3388 domain-containing protein -
  F0T56_RS13115 - 2913001..2913993 (+) 993 WP_068650575.1 helix-turn-helix domain-containing protein -
  F0T56_RS24995 - 2914101..2914262 (+) 162 WP_169810121.1 hypothetical protein -
  F0T56_RS13120 - 2914395..2914886 (+) 492 WP_068580276.1 YajQ family cyclic di-GMP-binding protein -
  F0T56_RS13125 pgsA 2915155..2915742 (+) 588 WP_068650723.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F0T56_RS13130 cinA 2915922..2917172 (+) 1251 WP_068650574.1 competence/damage-inducible protein A Machinery gene
  F0T56_RS13135 recA 2917412..2918473 (+) 1062 WP_068650573.1 recombinase RecA Machinery gene
  F0T56_RS13140 - 2918584..2919321 (+) 738 WP_420848775.1 regulatory protein RecX -
  F0T56_RS13145 rny 2919635..2921179 (+) 1545 WP_139331637.1 ribonuclease Y -
  F0T56_RS13150 - 2921250..2922044 (+) 795 WP_068650572.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45652.58 Da        Isoelectric Point: 4.8344

>NTDB_id=385457 F0T56_RS13130 WP_068650574.1 2915922..2917172(+) (cinA) [Paenibacillus antarcticus strain KACC 11469]
MKAEIIAVGTELLLGQIVNTNAQFLSVELATLGIDVYFQTVVGDNMTRLQESIQLASQRADIILLTGGIGPTQDDLTKDA
LAAFLRRELHIDRLAMDHVAQFFTKRDVHMTENNRRQALVIDGSTPLPNATGLAVGNALSHEGKYYIILPGPPKEMAPMF
HEQAKPWLLQHALTDEMPIYSSMLKFAGIGESLLEDRLLDLIQNQSDPTIAPYAKEGEVTVRISTKATSEQEAMIKLNAL
EKQIQSLLPEHMYASGDIPIEKAIVDLMTDQGKTLSAAESCTGGLLMERITSVPGSATVFLGGIVCYSNQMKEKLLNVPH
DLLEGEDAPGAVSAEVAQVLAEQVRMITDTDYGLAITGVAGPAYSERKPVGLVYIAIAERDKKTEVYELNLIGNRETIRV
RTVKSLLYRLWRIIVN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=385457 F0T56_RS13130 WP_068650574.1 2915922..2917172(+) (cinA) [Paenibacillus antarcticus strain KACC 11469]
ATGAAGGCAGAGATCATTGCAGTAGGTACAGAATTACTATTGGGACAAATCGTGAATACAAATGCTCAATTCTTGTCAGT
AGAATTAGCAACGCTTGGAATTGATGTTTATTTCCAAACCGTCGTTGGTGATAATATGACCAGGCTTCAGGAGTCCATCC
AATTGGCAAGTCAGCGCGCGGATATCATTCTATTAACAGGTGGTATTGGGCCTACACAAGATGATTTAACTAAGGATGCT
CTTGCAGCTTTTTTAAGAAGGGAATTACATATTGATCGTCTTGCCATGGATCATGTGGCACAATTCTTTACAAAGCGCGA
CGTGCATATGACGGAGAATAATCGGCGTCAAGCCTTGGTGATTGATGGGAGTACCCCTCTTCCCAACGCGACAGGTCTTG
CAGTAGGTAACGCTCTTTCACATGAAGGGAAATACTATATTATTCTTCCTGGCCCTCCGAAAGAAATGGCTCCTATGTTC
CATGAACAGGCTAAGCCATGGTTGCTGCAGCATGCACTTACAGATGAAATGCCAATTTATTCTTCGATGTTAAAGTTTGC
TGGTATTGGAGAATCTTTACTTGAGGACCGACTGTTAGATTTAATTCAGAATCAAAGTGACCCAACTATTGCGCCTTACG
CTAAAGAGGGCGAAGTCACGGTTCGGATATCAACAAAGGCTACTAGTGAACAAGAAGCGATGATTAAGCTCAATGCGTTA
GAGAAACAGATTCAGTCATTACTTCCTGAACATATGTATGCTAGTGGAGATATACCTATAGAGAAGGCTATTGTTGATCT
AATGACTGATCAGGGGAAAACTTTAAGTGCAGCGGAAAGTTGTACCGGAGGTCTATTGATGGAAAGAATTACATCAGTAC
CAGGTAGCGCGACGGTCTTCTTAGGCGGGATTGTATGCTATTCTAATCAGATGAAAGAAAAGTTACTAAACGTACCTCAC
GATTTACTTGAAGGAGAAGATGCTCCAGGAGCTGTAAGTGCGGAAGTTGCACAAGTGCTTGCAGAACAAGTAAGAATGAT
TACGGATACGGATTATGGATTGGCAATTACTGGTGTTGCGGGTCCAGCTTATTCCGAGCGCAAGCCAGTAGGACTTGTAT
ATATTGCCATTGCCGAGCGGGACAAGAAAACGGAAGTGTACGAGCTGAATTTAATAGGTAACCGAGAGACCATCAGGGTT
CGTACAGTTAAAAGTCTGCTGTACCGTTTATGGCGAATAATCGTAAACTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-254)

Competence-damaged protein (CinA)

(260-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A168MTV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.029

99.038

0.486
  cinA Streptococcus mitis NCTC 12261

48.786

99.038

0.483
  cinA Streptococcus mitis SK321

48.786

99.038

0.483
  cinA Streptococcus pneumoniae Rx1

48.544

99.038

0.481
  cinA Streptococcus pneumoniae R6

48.544

99.038

0.481
  cinA Streptococcus pneumoniae D39

48.301

99.038

0.478
  cinA Streptococcus mutans UA159

47.561

98.558

0.469
  cinA Bacillus subtilis subsp. subtilis str. 168

44.552

99.279

0.442
  cinA Streptococcus suis isolate S10

43.194

91.827

0.397

Multiple sequence alignment