Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG575_RS04725 | Genome accession | NZ_CP051540 |
| Coordinates | 1004770..1005033 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori strain LIM-002 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 999770..1010033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG575_RS04700 (HG575_04700) | - | 1001207..1002916 (-) | 1710 | Protein_926 | dynamin family protein | - |
| HG575_RS04705 (HG575_04705) | - | 1002970..1003758 (+) | 789 | WP_202247571.1 | integrase | - |
| HG575_RS04710 (HG575_04710) | - | 1003779..1003985 (+) | 207 | WP_237419588.1 | hypothetical protein | - |
| HG575_RS04715 (HG575_04715) | - | 1003982..1004461 (+) | 480 | WP_202247575.1 | hypothetical protein | - |
| HG575_RS04720 (HG575_04720) | comB2 | 1004458..1004748 (+) | 291 | WP_202247577.1 | TrbC/VirB2 family protein | Machinery gene |
| HG575_RS04725 (HG575_04725) | comB3 | 1004770..1005033 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HG575_RS04730 (HG575_04730) | - | 1005045..1005281 (+) | 237 | WP_202247579.1 | hypothetical protein | - |
| HG575_RS04735 (HG575_04735) | comB4 | 1005281..1007845 (+) | 2565 | WP_202247581.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HG575_RS04740 (HG575_04740) | - | 1007847..1007981 (+) | 135 | WP_078265615.1 | type IV secretion system protein VirB7 | - |
| HG575_RS04745 (HG575_04745) | - | 1007974..1009140 (+) | 1167 | WP_202247583.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=385443 HG575_RS04725 WP_001177721.1 1004770..1005033(+) (comB3) [Helicobacter pylori strain LIM-002]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=385443 HG575_RS04725 WP_001177721.1 1004770..1005033(+) (comB3) [Helicobacter pylori strain LIM-002]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |