Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG575_RS04720 Genome accession   NZ_CP051540
Coordinates   1004458..1004748 (+) Length   96 a.a.
NCBI ID   WP_202247577.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 999458..1009748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS04695 (HG575_04695) - 999600..1001207 (-) 1608 WP_202247569.1 dynamin-like GTPase family protein -
  HG575_RS04700 (HG575_04700) - 1001207..1002916 (-) 1710 Protein_926 dynamin family protein -
  HG575_RS04705 (HG575_04705) - 1002970..1003758 (+) 789 WP_202247571.1 integrase -
  HG575_RS04710 (HG575_04710) - 1003779..1003985 (+) 207 WP_237419588.1 hypothetical protein -
  HG575_RS04715 (HG575_04715) - 1003982..1004461 (+) 480 WP_202247575.1 hypothetical protein -
  HG575_RS04720 (HG575_04720) comB2 1004458..1004748 (+) 291 WP_202247577.1 TrbC/VirB2 family protein Machinery gene
  HG575_RS04725 (HG575_04725) comB3 1004770..1005033 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG575_RS04730 (HG575_04730) - 1005045..1005281 (+) 237 WP_202247579.1 hypothetical protein -
  HG575_RS04735 (HG575_04735) comB4 1005281..1007845 (+) 2565 WP_202247581.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG575_RS04740 (HG575_04740) - 1007847..1007981 (+) 135 WP_078265615.1 type IV secretion system protein VirB7 -
  HG575_RS04745 (HG575_04745) - 1007974..1009140 (+) 1167 WP_202247583.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10956.26 Da        Isoelectric Point: 11.1589

>NTDB_id=385442 HG575_RS04720 WP_202247577.1 1004458..1004748(+) (comB2) [Helicobacter pylori strain LIM-002]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPSLAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=385442 HG575_RS04720 WP_202247577.1 1004458..1004748(+) (comB2) [Helicobacter pylori strain LIM-002]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAACTAC
CTTTTTTAATAGCATTGAGCAACAACTTCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCATCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

60.92

90.625

0.552