NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HG576_RS03165	Genome accession	NZ_CP051539
Coordinates	654391..655911 (+)	Length	506 a.a.
NCBI ID	WP_202139136.1	Uniprot ID	-
Organism	Helicobacter pylori strain LIM-003
Function	interact with DprA (predicted from homology) Homologous recombination

Genomic Context

Location: 649391..660911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG576_RS03135 (HG576_03135)	moaC	649546..650022 (+)	477	WP_001131576.1	cyclic pyranopterin monophosphate synthase MoaC	-
HG576_RS03140 (HG576_03140)	hpaA	650135..650917 (+)	783	WP_078263109.1	flagellar sheath lipoprotein HpaA	-
HG576_RS03145 (HG576_03145)	-	650947..651783 (+)	837	WP_078241407.1	outer membrane protein	-
HG576_RS03150 (HG576_03150)	tig	651893..653248 (+)	1356	WP_078259851.1	trigger factor	-
HG576_RS03155 (HG576_03155)	clpP	653269..653856 (+)	588	WP_000540576.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
HG576_RS03160 (HG576_03160)	def	653861..654385 (+)	525	WP_039084986.1	peptide deformylase	-
HG576_RS03165 (HG576_03165)	comM	654391..655911 (+)	1521	WP_202139136.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HG576_RS03170 (HG576_03170)	-	655936..657996 (+)	2061	WP_202139137.1	heavy metal translocating P-type ATPase	-
HG576_RS03175 (HG576_03175)	-	658040..659338 (+)	1299	WP_202139138.1	restriction endonuclease subunit S	-
HG576_RS07945	-	659363..659488 (-)	126	WP_338325829.1	AfsR family transcriptional regulator	-
HG576_RS03180 (HG576_03180)	-	659534..659848 (+)	315	WP_202139139.1	hypothetical protein	-
HG576_RS03185 (HG576_03185)	-	659841..660122 (+)	282	WP_000921941.1	YafQ family addiction module toxin	-
HG576_RS03190 (HG576_03190)	-	660391..660648 (-)	258	Protein_636	type IV secretory system conjugative DNA transfer family protein	-
HG576_RS03195 (HG576_03195)	-	660712..660879 (+)	168	Protein_637	restriction endonuclease subunit S	-

Sequence

Protein

Download Length: 506 a.a. Molecular weight: 57278.31 Da Isoelectric Point: 8.3893

                                >NTDB_id=385396 HG576_RS03165 WP_202139136.1 654391..655911(+) (comM) [Helicobacter pylori strain LIM-003]

MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF

DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE

ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR

MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD

ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSSTKACRCQDREIVQYKNRLSEPFLDRIDLFVQMEE

GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAIERFNLSMRSVNKVKKVAR

TIADLNACENIEKSHMLKALSFRKIS

Nucleotide

Download Length: 1521 bp

                                >NTDB_id=385396 HG576_RS03165 WP_202139136.1 654391..655911(+) (comM) [Helicobacter pylori strain LIM-003]

ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC

TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAATTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA

ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT

GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG

GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA

TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA

GCTTTAGAAATCTTACAAAATCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA

CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG

CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATTATTAATCGC

ATGCGCTATATCTTACCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGATAG

CACCTATTACCCCTTAAGAAGCTTTAGGAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA

AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT

ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC

CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG

ATAGGGAAATTGTGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG

GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA

AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG

CACAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG

ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA

A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Helicobacter pylori 26695	96.443	100	0.964
comM	Acinetobacter baylyi ADP1	36.399	100	0.368
comM	Legionella pneumophila str. Paris	36.581	99.407	0.364
comM	Legionella pneumophila strain ERS1305867	36.581	99.407	0.364

Detailed information NTG0385396