Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG581_RS02260 | Genome accession | NZ_CP051535 |
| Coordinates | 471691..471954 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori strain LIM-008 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 466691..476954
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG581_RS02230 (HG581_02225) | hofC | 466783..468369 (+) | 1587 | WP_202138295.1 | outer membrane beta-barrel protein HofC | - |
| HG581_RS02235 (HG581_02230) | hofD | 468442..469839 (+) | 1398 | WP_120895870.1 | outer membrane beta-barrel protein HofD | - |
| HG581_RS02240 (HG581_02235) | - | 469903..470691 (+) | 789 | WP_202138296.1 | integrase | - |
| HG581_RS02245 (HG581_02240) | - | 470694..470918 (+) | 225 | WP_202138297.1 | hypothetical protein | - |
| HG581_RS02250 (HG581_02245) | - | 470915..471394 (+) | 480 | WP_202138298.1 | hypothetical protein | - |
| HG581_RS02255 (HG581_02250) | comB2 | 471391..471681 (+) | 291 | WP_202138299.1 | TrbC/VirB2 family protein | Machinery gene |
| HG581_RS02260 (HG581_02255) | comB3 | 471691..471954 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HG581_RS02265 (HG581_02260) | - | 471966..472202 (+) | 237 | WP_202138300.1 | hypothetical protein | - |
| HG581_RS02270 (HG581_02265) | comB4 | 472202..474766 (+) | 2565 | WP_202138301.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HG581_RS07945 | - | 474768..474902 (+) | 135 | WP_077654653.1 | type IV secretion system protein VirB7 | - |
| HG581_RS02275 (HG581_02270) | - | 474895..476061 (+) | 1167 | WP_202138302.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=385270 HG581_RS02260 WP_001177721.1 471691..471954(+) (comB3) [Helicobacter pylori strain LIM-008]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=385270 HG581_RS02260 WP_001177721.1 471691..471954(+) (comB3) [Helicobacter pylori strain LIM-008]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGTTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGTTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |