Detailed information NTG0385235

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: F0Q02_RS21525
• Genome accession: NZ_CP043573
• Coordinates: 4725982..4727160 (+)
• Length: 392 a.a.
• NCBI ID: WP_003051858.1
• Uniprot ID: -
• Organism: Comamonas testosteroni strain R5-28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4720982..4732160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0Q02_RS21505	coaD	4721436..4721930 (-)	495	WP_003051866.1	pantetheine-phosphate adenylyltransferase	-
F0Q02_RS21510	rsmD	4722091..4722801 (-)	711	WP_003051863.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
F0Q02_RS21515	-	4722798..4724150 (-)	1353	WP_003051861.1	M16 family metallopeptidase	-
F0Q02_RS21520	-	4724484..4725917 (-)	1434	WP_003051860.1	M16 family metallopeptidase	-
F0Q02_RS21525	pilA	4725982..4727160 (+)	1179	WP_003051858.1	signal recognition particle-docking protein FtsY	Machinery gene
F0Q02_RS21530	cutA	4727268..4727642 (-)	375	WP_003051857.1	divalent-cation tolerance protein CutA	-
F0Q02_RS21535	-	4727685..4728693 (-)	1009	Protein_4214	2-dehydropantoate 2-reductase	-
F0Q02_RS21540	-	4728933..4729241 (+)	309	WP_003051854.1	hypothetical protein	-
F0Q02_RS21545	-	4729226..4730674 (-)	1449	WP_003051851.1	aldehyde dehydrogenase family protein	-
F0Q02_RS21550	-	4730789..4731718 (-)	930	WP_003051850.1	dihydrodipicolinate synthase family protein	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 41417.98 Da
• Isoelectric Point: 6.3734

>NTDB_id=385235 F0Q02_RS21525 WP_003051858.1 4725982..4727160(+) (pilA) [Comamonas testosteroni strain R5-28]
MFSFFKKKPNSPDVVNTTPAAETTAAPASASASAAPTRPASQDTPAAPAENGNSSWWRKPFGGGATAKAGEDQPATQDFV
AAPEPTAKPQAPNSRQSWMERLKAGLRKTGSSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDLKRRVKETKT
TEPAAVKALLADALTDLLRPLEKPLTIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLADGEQSVLLAAADTFRAAAREQLG
VWANRNTVEIISQDGGDPAAVSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGN
TGQNALTQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQALLS

Nucleotide

• Length: 1179 bp

>NTDB_id=385235 F0Q02_RS21525 WP_003051858.1 4725982..4727160(+) (pilA) [Comamonas testosteroni strain R5-28]
ATGTTCAGTTTTTTCAAGAAAAAGCCCAATTCACCCGATGTGGTGAACACCACGCCCGCTGCCGAGACAACCGCGGCGCC
TGCGTCTGCGTCTGCGTCTGCTGCGCCAACCAGGCCCGCTTCACAGGATACGCCTGCTGCGCCTGCCGAAAATGGCAACA
GCTCCTGGTGGCGCAAGCCCTTTGGCGGCGGCGCGACGGCCAAGGCCGGCGAAGATCAGCCTGCTACTCAGGATTTTGTA
GCAGCCCCCGAGCCTACCGCAAAGCCGCAAGCCCCAAATTCCCGTCAAAGCTGGATGGAACGCCTGAAAGCCGGTCTGCG
CAAGACCGGCTCCAGCATTGCCACCGTCTTTACCGGCACCCAGATCGACGACCGGCTCTATGAAGAGCTGGAGGACGCGC
TGCTGATGGCCGACACCGGCGTCAAGGCCACCCAGCATCTGCTGGAAGACCTGAAGCGCCGCGTCAAGGAAACCAAGACC
ACCGAGCCCGCCGCCGTCAAGGCACTGCTGGCCGATGCGCTGACCGATTTGCTCAGGCCGCTGGAAAAGCCGCTGACCAT
CGGCGAGCACACACCGACCGTCATCATGGTGGCCGGCGTCAACGGTGCGGGCAAGACCACTTCCATCGGCAAGCTGACCA
AGCATCTGGCCGACGGCGAGCAGTCCGTGCTGCTGGCCGCCGCCGACACCTTCCGCGCCGCCGCGCGTGAGCAGCTGGGC
GTCTGGGCCAATCGCAACACCGTGGAAATCATCAGCCAGGACGGTGGCGACCCCGCCGCCGTGAGCTTCGATGCCGTCTC
CGCCGGCAAGGCGCGCAAAAAGGATGTGGTGCTGGTCGATACGGCCGGACGCCTGCCCACGCAGCTGCATCTGATGGAAG
AGCTCAAGAAGATCAAGCGCGTGGTGAGCAAGGCCGACGGCACGGCGCCGCACGAGGTGCTGCTGGTGATTGACGGCAAC
ACCGGCCAGAACGCCCTGACCCAGGTGCGCGCCTTCGACGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAACTCGA
CGGCACGGCCAAGGGCGGCGTGCTGGCCGCGATTGCGCAGGAGCGCCCCGTGCCCGTCTACTTCATCGGCGTGGGCGAGA
AGATCGAGGATCTGGAAACCTTCAGCGCACGCGAGTTCGCCCAGGCCCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (111-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.349	100	0.523