Detailed information NTG0385209

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F0P98_RS04525
• Genome accession: NZ_CP043570
• Coordinates: 1026831..1028198 (-)
• Length: 455 a.a.
• NCBI ID: WP_054667220.1
• Uniprot ID: A0A0S1B260
• Organism: Stenotrophomonas acidaminiphila strain T25-65
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1021831..1033198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0P98_RS04515	-	1022530..1024722 (+)	2193	WP_182212764.1	EAL domain-containing protein	-
F0P98_RS04520	-	1024725..1026653 (+)	1929	WP_182212765.1	sensor histidine kinase	-
F0P98_RS04525	pilR	1026831..1028198 (-)	1368	WP_054667220.1	sigma-54 dependent transcriptional regulator	Regulator
F0P98_RS04530	-	1028262..1029875 (-)	1614	WP_182212766.1	ATP-binding protein	-
F0P98_RS04535	sucC	1030136..1031308 (+)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
F0P98_RS04540	sucD	1031333..1032208 (+)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
F0P98_RS04545	-	1032285..1032968 (-)	684	WP_054667215.1	DUF3108 domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49030.14 Da
• Isoelectric Point: 6.2561

>NTDB_id=385209 F0P98_RS04525 WP_054667220.1 1026831..1028198(-) (pilR) [Stenotrophomonas acidaminiphila strain T25-65]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERVAQPAAPESASRLLGESQAMSDLRSTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRGDAGSASEEAPAD
IDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=385209 F0P98_RS04525 WP_054667220.1 1026831..1028198(-) (pilR) [Stenotrophomonas acidaminiphila strain T25-65]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACCCTCGGCAGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGTGGCGCAGCCCGCCGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAATCGCAGGCAATGTCCGACCTGCGCAGCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATCCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAACCGGGACTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCTCGGC
CACCGAGGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTCCCCCCGCTGCGCGAGCGGCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCGCCCTCGGCGCTGGACGC
CCTGGGCGGTTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGACCCCGCGCGGCGATGCCGGCAGCGCGAGCGAAGAAGCTCCGGCCGAC
ATCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCCGCGCAGTTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A0S1B260

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.302	99.121	0.637
pilR	Acinetobacter baumannii strain A118	48.913	100	0.495