Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | F0P98_RS04510 | Genome accession | NZ_CP043570 |
| Coordinates | 1020510..1022240 (+) | Length | 576 a.a. |
| NCBI ID | WP_054667226.1 | Uniprot ID | - |
| Organism | Stenotrophomonas acidaminiphila strain T25-65 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1015510..1027240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0P98_RS04500 | - | 1017399..1019312 (+) | 1914 | WP_182212762.1 | hypothetical protein | - |
| F0P98_RS04505 | galE | 1019312..1020286 (+) | 975 | WP_182212763.1 | UDP-glucose 4-epimerase GalE | - |
| F0P98_RS04510 | pilB | 1020510..1022240 (+) | 1731 | WP_054667226.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F0P98_RS04515 | - | 1022530..1024722 (+) | 2193 | WP_182212764.1 | EAL domain-containing protein | - |
| F0P98_RS04520 | - | 1024725..1026653 (+) | 1929 | WP_182212765.1 | sensor histidine kinase | - |
Sequence
Protein
Download Length: 576 a.a. Molecular weight: 62481.76 Da Isoelectric Point: 5.9537
>NTDB_id=385208 F0P98_RS04510 WP_054667226.1 1020510..1022240(+) (pilB) [Stenotrophomonas acidaminiphila strain T25-65]
MNTAVAANLVGITGIARRLVQDGALDETAARNAMAQAATAKVPLAQWLAEKKLVNAAQLAAANAVEFGMPLLDASVFDAN
HNAMKLVSEELLRKHNVLPLFRRGGKLFIGTSNPTQSLDEIKFHTNLVVEPILVDEDQIRRTLDLWVASNESLTGGLGDD
EEGMGDLDVAAGDEDMGGGGDTGIDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRFRIDGLLKTVARAPVK
LRERIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKIVLRILDGSAAKLGIDKLGYEPVQQKLF
LDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDV
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCPNCKKPAHLPEN
ALLAEGFTQAQIDKGIQLYEPVGCEECTEGYKGRTGIYQVMPMTDEIATIVLQGGNALDIAEAAQKIGVNDLRQSALLKA
AQGITSLTEINRVTKD
MNTAVAANLVGITGIARRLVQDGALDETAARNAMAQAATAKVPLAQWLAEKKLVNAAQLAAANAVEFGMPLLDASVFDAN
HNAMKLVSEELLRKHNVLPLFRRGGKLFIGTSNPTQSLDEIKFHTNLVVEPILVDEDQIRRTLDLWVASNESLTGGLGDD
EEGMGDLDVAAGDEDMGGGGDTGIDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRFRIDGLLKTVARAPVK
LRERIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKIVLRILDGSAAKLGIDKLGYEPVQQKLF
LDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDV
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCPNCKKPAHLPEN
ALLAEGFTQAQIDKGIQLYEPVGCEECTEGYKGRTGIYQVMPMTDEIATIVLQGGNALDIAEAAQKIGVNDLRQSALLKA
AQGITSLTEINRVTKD
Nucleotide
Download Length: 1731 bp
>NTDB_id=385208 F0P98_RS04510 WP_054667226.1 1020510..1022240(+) (pilB) [Stenotrophomonas acidaminiphila strain T25-65]
ATGAATACAGCCGTTGCCGCCAATCTCGTGGGCATCACCGGGATCGCCCGCCGCCTGGTGCAGGACGGTGCGCTGGACGA
GACCGCGGCGCGCAACGCGATGGCGCAGGCGGCGACGGCCAAGGTGCCGCTGGCACAGTGGCTGGCCGAGAAGAAGCTGG
TCAACGCCGCGCAGCTGGCCGCGGCCAACGCCGTCGAGTTCGGCATGCCGCTGCTGGATGCCTCGGTATTCGACGCCAAC
CACAACGCGATGAAGCTGGTCAGCGAGGAGCTGCTGCGCAAGCACAACGTGCTGCCGCTGTTCAGGCGCGGCGGCAAGCT
GTTCATCGGTACCAGCAATCCGACCCAGTCGCTGGACGAGATCAAGTTCCACACCAACCTGGTGGTCGAGCCGATCCTGG
TCGACGAGGACCAGATCCGGCGCACGCTCGACCTGTGGGTGGCGAGCAACGAAAGCCTGACCGGCGGACTCGGCGATGAC
GAGGAGGGCATGGGCGACCTGGACGTTGCCGCCGGCGACGAGGACATGGGGGGCGGTGGCGATACCGGCATCGACGCCAA
GGGCGACGACACCCCGGTGGTCAAGTTCGTCAACAAGGTGCTGGTGGACGCGATCCGCCGCGGCGCCTCGGACATCCACT
TCGAGCCCTACGAAGACGACTACCGGGTGCGCTTCCGCATCGACGGCCTGCTCAAGACCGTGGCCAGGGCGCCGGTGAAG
CTGCGCGAGCGCATCGCCGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGCCG
CATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACGCTGCCGACGCTGTTCGGCGAAAAGATCG
TGCTGCGTATCCTCGATGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGTTACGAGCCGGTGCAGCAGAAGCTGTTC
CTGGATGCCATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGCCCCACCGGTTCGGGCAAGACCGTGTCGCTGTATAC
CGCGCTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAGGACCCGGTCGAAATCCGCCTGCCGGGCGTGA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACTTTCGCCGCTGCGCTGCGCTCGTTCCTGCGCCAGGATCCGGACGTG
ATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCGGAGATCGCCATCAAGGCGGCCCAGACCGGCCACATGGTGCTGTC
CACCCTGCATACCAACGACGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCCCCGTACAACATCACCTCCT
CGGTCACGCTGGTCATCGCCCAGCGCCTGGCGCGCCGGCTGTGTCCCAACTGCAAGAAGCCGGCGCACCTGCCGGAGAAT
GCGCTGCTGGCCGAGGGGTTCACCCAGGCGCAGATCGACAAGGGCATCCAGCTCTACGAGCCGGTCGGCTGCGAGGAGTG
CACCGAGGGCTACAAGGGGCGTACCGGCATCTACCAGGTGATGCCGATGACGGACGAGATCGCCACCATCGTGCTGCAGG
GCGGCAACGCGCTGGACATCGCCGAGGCCGCGCAGAAGATCGGGGTCAACGACCTGCGCCAGTCGGCCCTGCTCAAGGCC
GCGCAGGGCATCACCAGCCTGACCGAGATCAACCGCGTCACCAAGGACTGA
ATGAATACAGCCGTTGCCGCCAATCTCGTGGGCATCACCGGGATCGCCCGCCGCCTGGTGCAGGACGGTGCGCTGGACGA
GACCGCGGCGCGCAACGCGATGGCGCAGGCGGCGACGGCCAAGGTGCCGCTGGCACAGTGGCTGGCCGAGAAGAAGCTGG
TCAACGCCGCGCAGCTGGCCGCGGCCAACGCCGTCGAGTTCGGCATGCCGCTGCTGGATGCCTCGGTATTCGACGCCAAC
CACAACGCGATGAAGCTGGTCAGCGAGGAGCTGCTGCGCAAGCACAACGTGCTGCCGCTGTTCAGGCGCGGCGGCAAGCT
GTTCATCGGTACCAGCAATCCGACCCAGTCGCTGGACGAGATCAAGTTCCACACCAACCTGGTGGTCGAGCCGATCCTGG
TCGACGAGGACCAGATCCGGCGCACGCTCGACCTGTGGGTGGCGAGCAACGAAAGCCTGACCGGCGGACTCGGCGATGAC
GAGGAGGGCATGGGCGACCTGGACGTTGCCGCCGGCGACGAGGACATGGGGGGCGGTGGCGATACCGGCATCGACGCCAA
GGGCGACGACACCCCGGTGGTCAAGTTCGTCAACAAGGTGCTGGTGGACGCGATCCGCCGCGGCGCCTCGGACATCCACT
TCGAGCCCTACGAAGACGACTACCGGGTGCGCTTCCGCATCGACGGCCTGCTCAAGACCGTGGCCAGGGCGCCGGTGAAG
CTGCGCGAGCGCATCGCCGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGCCG
CATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACGCTGCCGACGCTGTTCGGCGAAAAGATCG
TGCTGCGTATCCTCGATGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGTTACGAGCCGGTGCAGCAGAAGCTGTTC
CTGGATGCCATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGCCCCACCGGTTCGGGCAAGACCGTGTCGCTGTATAC
CGCGCTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAGGACCCGGTCGAAATCCGCCTGCCGGGCGTGA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACTTTCGCCGCTGCGCTGCGCTCGTTCCTGCGCCAGGATCCGGACGTG
ATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCGGAGATCGCCATCAAGGCGGCCCAGACCGGCCACATGGTGCTGTC
CACCCTGCATACCAACGACGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCCCCGTACAACATCACCTCCT
CGGTCACGCTGGTCATCGCCCAGCGCCTGGCGCGCCGGCTGTGTCCCAACTGCAAGAAGCCGGCGCACCTGCCGGAGAAT
GCGCTGCTGGCCGAGGGGTTCACCCAGGCGCAGATCGACAAGGGCATCCAGCTCTACGAGCCGGTCGGCTGCGAGGAGTG
CACCGAGGGCTACAAGGGGCGTACCGGCATCTACCAGGTGATGCCGATGACGGACGAGATCGCCACCATCGTGCTGCAGG
GCGGCAACGCGCTGGACATCGCCGAGGCCGCGCAGAAGATCGGGGTCAACGACCTGCGCCAGTCGGCCCTGCTCAAGGCC
GCGCAGGGCATCACCAGCCTGACCGAGATCAACCGCGTCACCAAGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
55.226 |
99.653 |
0.55 |
| pilB | Acinetobacter baylyi ADP1 |
55.634 |
98.611 |
0.549 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.85 |
100 |
0.531 |
| pilF | Neisseria gonorrhoeae MS11 |
49.12 |
98.611 |
0.484 |
| pilB | Vibrio cholerae strain A1552 |
48.18 |
100 |
0.483 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
47.711 |
98.611 |
0.47 |
| pilB | Vibrio campbellii strain DS40M4 |
46.667 |
98.958 |
0.462 |