Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BAMF_RS38200 Genome accession   NC_014551
Coordinates   3538878..3539219 (-) Length   113 a.a.
NCBI ID   WP_013353870.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3533878..3544219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS38185 (BAMF_3473) - 3534146..3536920 (+) 2775 WP_013353867.1 DEAD/DEAH box helicase -
  BAMF_RS38190 (BAMF_3474) - 3537033..3537890 (-) 858 WP_013353868.1 Cof-type HAD-IIB family hydrolase -
  BAMF_RS38195 (BAMF_3475) - 3537887..3538669 (-) 783 WP_013353869.1 DeoR/GlpR family DNA-binding transcription regulator -
  BAMF_RS38200 (BAMF_3476) ssbB 3538878..3539219 (-) 342 WP_013353870.1 single-stranded DNA-binding protein Machinery gene
  BAMF_RS38205 (BAMF_3477) - 3539316..3539666 (-) 351 WP_013353871.1 hypothetical protein -
  BAMF_RS38210 (BAMF_3478) - 3539838..3540248 (+) 411 WP_013353872.1 YwpF-like family protein -
  BAMF_RS38215 (BAMF_3479) mscL 3540294..3540689 (-) 396 WP_013353873.1 large conductance mechanosensitive channel protein MscL -
  BAMF_RS38220 (BAMF_3480) fabZ 3540745..3541170 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BAMF_RS38225 (BAMF_3481) - 3541365..3542429 (+) 1065 WP_013353874.1 tetratricopeptide repeat protein -
  BAMF_RS38230 (BAMF_3482) - 3542447..3543268 (-) 822 WP_013353875.1 flagellar hook-basal body protein -
  BAMF_RS38235 (BAMF_3483) - 3543293..3544090 (-) 798 WP_013353876.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12604.48 Da        Isoelectric Point: 9.5812

>NTDB_id=38514 BAMF_RS38200 WP_013353870.1 3538878..3539219(-) (ssbB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVSRNFKSASGETGADFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=38514 BAMF_RS38200 WP_013353870.1 3538878..3539219(-) (ssbB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
TTGTTTAACCACGTTATGCTTGTCGGACGGCTGACGAAAGATCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACCTTGGCGGTGAGCCGCAATTTTAAAAGCGCGTCGGGCGAAACCGGTGCTGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCGCTGTACTGCCAAAAAGGGTCAATGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTCTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372

Multiple sequence alignment