Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   CVCAS_RS13665 Genome accession   NC_017486
Coordinates   840714..841709 (+) Length   331 a.a.
NCBI ID   WP_371400163.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 835714..846709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS04155 (CVCAS_0797) rpsA 836674..837900 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  CVCAS_RS04160 (CVCAS_0798) - 838051..838767 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  CVCAS_RS04165 (CVCAS_0799) pnuC 838895..839608 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  CVCAS_RS13660 uvrC 839703..840665 (+) 963 Protein_785 excinuclease ABC subunit UvrC -
  CVCAS_RS13665 uvrC 840714..841709 (+) 996 WP_371400163.1 hypothetical protein Machinery gene
  CVCAS_RS04175 (CVCAS_0801) mutY 841873..843036 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  CVCAS_RS04180 (CVCAS_0802) pepV 843102..844520 (+) 1419 WP_003132599.1 dipeptidase PepV -
  CVCAS_RS04185 (CVCAS_0803) acpS 844623..844982 (+) 360 WP_003132600.1 holo-ACP synthase -
  CVCAS_RS04190 (CVCAS_0804) alr 845027..846130 (+) 1104 WP_014570488.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37029.77 Da        Isoelectric Point: 10.1078

>NTDB_id=38514 CVCAS_RS13665 WP_371400163.1 840714..841709(+) (uvrC) [Lactococcus lactis subsp. lactis CV56]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEADIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=38514 CVCAS_RS13665 WP_371400163.1 840714..841709(+) (uvrC) [Lactococcus lactis subsp. lactis CV56]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCGAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
ACATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae D39

70.37

81.571

0.574
  uvrC Streptococcus pneumoniae TIGR4

70.37

81.571

0.574

Multiple sequence alignment