Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EVS87_RS07915 Genome accession   NZ_CP043559
Coordinates   1533028..1533930 (+) Length   300 a.a.
NCBI ID   WP_135008910.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1528028..1538930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS07895 (EVS87_007895) - 1528697..1530430 (+) 1734 WP_135008911.1 glycosyltransferase -
  EVS87_RS07900 (EVS87_007900) - 1530427..1530702 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  EVS87_RS07905 (EVS87_007905) sucC 1530879..1532039 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  EVS87_RS07910 (EVS87_007910) sucD 1532062..1532964 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  EVS87_RS07915 (EVS87_007915) dprA 1533028..1533930 (+) 903 WP_135008910.1 DNA-processing protein DprA Machinery gene
  EVS87_RS07920 (EVS87_007920) topA 1534125..1536200 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  EVS87_RS07925 (EVS87_007925) trmFO 1536271..1537575 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EVS87_RS07930 (EVS87_007930) xerC 1537638..1538555 (+) 918 WP_135008909.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34071.41 Da        Isoelectric Point: 8.2672

>NTDB_id=385107 EVS87_RS07915 WP_135008910.1 1533028..1533930(+) (dprA) [Bacillus altitudinis strain CHB19]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKLVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVYSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=385107 EVS87_RS07915 WP_135008910.1 1533028..1533930(+) (dprA) [Bacillus altitudinis strain CHB19]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAACTTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTTATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment