Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMF_RS35640 Genome accession   NC_014551
Coordinates   3026887..3027531 (-) Length   214 a.a.
NCBI ID   WP_013353394.1    Uniprot ID   A0A9P1NIP1
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021887..3032531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS35605 (BAMF_2960) - 3023072..3023503 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  BAMF_RS35610 (BAMF_2961) - 3023503..3023844 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  BAMF_RS35615 (BAMF_2962) - 3023837..3025318 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  BAMF_RS35620 (BAMF_2963) - 3025324..3025800 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  BAMF_RS35625 (BAMF_2964) - 3025800..3026084 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  BAMF_RS35630 (BAMF_2965) mnhG 3026068..3026442 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  BAMF_RS35635 (BAMF_2966) - 3026482..3026865 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  BAMF_RS35640 (BAMF_2967) comA 3026887..3027531 (-) 645 WP_013353394.1 response regulator transcription factor Regulator
  BAMF_RS35645 (BAMF_2968) comP 3027612..3029918 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  BAMF_RS35650 (BAMF_2969) comX 3029941..3030117 (-) 177 WP_013353396.1 competence pheromone ComX -
  BAMF_RS35655 (BAMF_2970) - 3030136..3031011 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  BAMF_RS35660 (BAMF_2971) degQ 3031163..3031303 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  BAMF_RS35665 (BAMF_2972) - 3031768..3032109 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=38505 BAMF_RS35640 WP_013353394.1 3026887..3027531(-) (comA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MKKILVIDDHPAVMEGTKTMLETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=38505 BAMF_RS35640 WP_013353394.1 3026887..3027531(-) (comA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATGCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment