Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   F0M21_RS01815 Genome accession   NZ_CP043546
Coordinates   334925..335323 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYP-B637     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 329925..340323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0M21_RS01790 (F0M21_01790) - 330096..331298 (+) 1203 WP_012116765.1 GTP-binding protein -
  F0M21_RS01795 (F0M21_01795) - 331363..332499 (+) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  F0M21_RS01800 (F0M21_01800) - 332514..332948 (+) 435 WP_012116767.1 RDD family protein -
  F0M21_RS01805 (F0M21_01805) - 333066..333344 (+) 279 WP_263612330.1 YckD family protein -
  F0M21_RS01810 (F0M21_01810) - 333448..334884 (+) 1437 WP_012116768.1 glycoside hydrolase family 1 protein -
  F0M21_RS01815 (F0M21_01815) nin/comJ 334925..335323 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  F0M21_RS01820 (F0M21_01820) nucA/comI 335344..335781 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F0M21_RS01825 (F0M21_01825) hxlB 336140..336697 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  F0M21_RS01830 (F0M21_01830) hxlA 336694..337329 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  F0M21_RS01835 (F0M21_01835) - 337561..337923 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=384945 F0M21_RS01815 WP_007609299.1 334925..335323(-) (nin/comJ) [Bacillus velezensis strain SYP-B637]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=384945 F0M21_RS01815 WP_007609299.1 334925..335323(-) (nin/comJ) [Bacillus velezensis strain SYP-B637]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGGGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCCGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment