Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   F0M21_RS01820 Genome accession   NZ_CP043546
Coordinates   335344..335781 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYP-B637     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330344..340781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0M21_RS01795 (F0M21_01795) - 331363..332499 (+) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  F0M21_RS01800 (F0M21_01800) - 332514..332948 (+) 435 WP_012116767.1 RDD family protein -
  F0M21_RS01805 (F0M21_01805) - 333066..333344 (+) 279 WP_263612330.1 YckD family protein -
  F0M21_RS01810 (F0M21_01810) - 333448..334884 (+) 1437 WP_012116768.1 glycoside hydrolase family 1 protein -
  F0M21_RS01815 (F0M21_01815) nin/comJ 334925..335323 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  F0M21_RS01820 (F0M21_01820) nucA/comI 335344..335781 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F0M21_RS01825 (F0M21_01825) hxlB 336140..336697 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  F0M21_RS01830 (F0M21_01830) hxlA 336694..337329 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  F0M21_RS01835 (F0M21_01835) - 337561..337923 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=384946 F0M21_RS01820 WP_003156588.1 335344..335781(-) (nucA/comI) [Bacillus velezensis strain SYP-B637]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=384946 F0M21_RS01820 WP_003156588.1 335344..335781(-) (nucA/comI) [Bacillus velezensis strain SYP-B637]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment