Detailed information NTG0038487

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CVCAS_RS10000
• Genome accession: NC_017486
• Coordinates: 2014244..2015320 (+)
• Length: 358 a.a.
• NCBI ID: WP_004254743.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis CV56
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2009244..2020320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVCAS_RS09975 (CVCAS_1956)	pgsA	2009404..2009976 (-)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
CVCAS_RS09980 (CVCAS_1957)	-	2010017..2010913 (-)	897	WP_004254758.1	RodZ family helix-turn-helix domain-containing protein	-
CVCAS_RS09985 (CVCAS_1958)	yfmH	2011125..2012408 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
CVCAS_RS09990 (CVCAS_1959)	yfmF	2012398..2013684 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
CVCAS_RS09995 (CVCAS_1960)	yaaA	2013882..2014244 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
CVCAS_RS10000 (CVCAS_1961)	recF	2014244..2015320 (+)	1077	WP_004254743.1	DNA replication/repair protein RecF	Machinery gene
CVCAS_RS10005 (CVCAS_1962)	-	2015407..2015775 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
CVCAS_RS10010 (CVCAS_1963)	-	2015853..2016230 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
CVCAS_RS10015 (CVCAS_1964)	-	2016243..2017187 (-)	945	WP_010906244.1	alpha/beta hydrolase	-
CVCAS_RS10020 (CVCAS_1965)	galE	2017310..2018290 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41382.31 Da
• Isoelectric Point: 6.8652

>NTDB_id=38487 CVCAS_RS10000 WP_004254743.1 2014244..2015320(+) (recF) [Lactococcus lactis subsp. lactis CV56]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLIRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=38487 CVCAS_RS10000 WP_004254743.1 2014244..2015320(+) (recF) [Lactococcus lactis subsp. lactis CV56]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGATCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.69	97.207	0.444