Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BAMF_RS31310 Genome accession   NC_014551
Coordinates   2212027..2212635 (+) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2207027..2217635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS31270 (BAMF_2123) - 2208010..2208516 (-) 507 WP_013352638.1 PTS glucose transporter subunit IIA -
  BAMF_RS31275 (BAMF_2124) - 2208653..2209066 (+) 414 WP_013352639.1 Hsp20/alpha crystallin family protein -
  BAMF_RS31280 (BAMF_2125) - 2209096..2209605 (-) 510 WP_013352640.1 YppG family protein -
  BAMF_RS31285 (BAMF_2126) - 2209794..2209976 (+) 183 WP_003153532.1 YppF family protein -
  BAMF_RS31290 (BAMF_2127) - 2210015..2210383 (-) 369 WP_013352641.1 YppE family protein -
  BAMF_RS31295 (BAMF_2128) - 2210429..2210671 (-) 243 WP_013352642.1 DUF5446 family protein -
  BAMF_RS31300 (BAMF_2129) sspM 2210876..2210980 (+) 105 WP_013352643.1 acid-soluble spore protein SspM -
  BAMF_RS31305 (BAMF_2130) - 2211023..2211985 (-) 963 WP_013352644.1 DUF2515 domain-containing protein -
  BAMF_RS31310 (BAMF_2131) recU 2212027..2212635 (+) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  BAMF_RS31315 (BAMF_2132) - 2212674..2215454 (+) 2781 WP_013352646.1 PBP1A family penicillin-binding protein -
  BAMF_RS31320 (BAMF_2133) - 2215532..2216023 (-) 492 WP_013352647.1 YpoC family protein -
  BAMF_RS31325 (BAMF_2134) nth 2216020..2216679 (-) 660 WP_013352648.1 endonuclease III -
  BAMF_RS31330 (BAMF_2135) dnaD 2216698..2217396 (-) 699 WP_013352649.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=38482 BAMF_RS31310 WP_014470057.1 2212027..2212635(+) (recU) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=38482 BAMF_RS31310 WP_014470057.1 2212027..2212635(+) (recU) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCTGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment