Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   FTN78_RS11380 Genome accession   NZ_CP043523
Coordinates   2205809..2206300 (+) Length   163 a.a.
NCBI ID   WP_021214976.1    Uniprot ID   A0A2X0R1V8
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2200809..2211300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN78_RS11365 (FTN78_chr2275) rpsB 2201718..2202485 (+) 768 WP_010906340.1 30S ribosomal protein S2 -
  FTN78_RS11370 (FTN78_chr2276) tsf 2202607..2203635 (+) 1029 WP_010906339.1 translation elongation factor Ts -
  FTN78_RS11375 (FTN78_chr2277) ezrA 2203821..2205551 (+) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  FTN78_RS11380 (FTN78_chr2278) comX 2205809..2206300 (+) 492 WP_021214976.1 protein ComX Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19818.66 Da        Isoelectric Point: 5.6118

>NTDB_id=384791 FTN78_RS11380 WP_021214976.1 2205809..2206300(+) (comX) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQNDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=384791 FTN78_RS11380 WP_021214976.1 2205809..2206300(+) (comX) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0R1V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761

Multiple sequence alignment