Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   CVCAS_RS05780 Genome accession   NC_017486
Coordinates   1148739..1149974 (+) Length   411 a.a.
NCBI ID   WP_014570582.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143739..1154974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS05750 (CVCAS_1117) - 1144573..1145166 (+) 594 WP_003132093.1 xanthine phosphoribosyltransferase -
  CVCAS_RS05755 (CVCAS_1118) - 1145215..1146519 (+) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  CVCAS_RS05760 (CVCAS_1119) - 1146548..1146961 (-) 414 WP_003132097.1 hypothetical protein -
  CVCAS_RS05765 (CVCAS_1120) - 1147081..1147590 (-) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVCAS_RS05770 (CVCAS_1121) - 1147989..1148495 (+) 507 WP_010905786.1 dihydrofolate reductase -
  CVCAS_RS05780 (CVCAS_1123) clpX 1148739..1149974 (+) 1236 WP_014570582.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  CVCAS_RS05785 (CVCAS_1124) yihA 1149971..1150558 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CVCAS_RS05790 (CVCAS_1125) folB 1150612..1150962 (+) 351 WP_003132106.1 dihydroneopterin aldolase -
  CVCAS_RS05795 (CVCAS_1126) folE 1151042..1152091 (+) 1050 WP_014570583.1 GTP cyclohydrolase I FolE -
  CVCAS_RS05800 (CVCAS_1127) folP 1152088..1153161 (+) 1074 WP_003132109.1 dihydropteroate synthase -
  CVCAS_RS05805 (CVCAS_1128) - 1153164..1153661 (+) 498 WP_003132112.1 NUDIX domain-containing protein -
  CVCAS_RS05810 (CVCAS_1129) - 1153680..1154963 (+) 1284 WP_003132113.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45994.86 Da        Isoelectric Point: 4.6053

>NTDB_id=38459 CVCAS_RS05780 WP_014570582.1 1148739..1149974(+) (clpX) [Lactococcus lactis subsp. lactis CV56]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=38459 CVCAS_RS05780 WP_014570582.1 1148739..1149974(+) (clpX) [Lactococcus lactis subsp. lactis CV56]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTGCAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ACGTTCCATTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GAACGGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TTCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.559

97.567

0.747
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564

Multiple sequence alignment