Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BAMF_RS20240 Genome accession   NC_014551
Coordinates   3445..4557 (+) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS20225 (BAMF_0001) dnaA 412..1752 (+) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  BAMF_RS20230 (BAMF_0002) dnaN 1938..3074 (+) 1137 WP_013350723.1 DNA polymerase III subunit beta -
  BAMF_RS20235 (BAMF_0003) rlbA 3214..3429 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  BAMF_RS20240 (BAMF_0004) recF 3445..4557 (+) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  BAMF_RS20245 (BAMF_0005) remB 4575..4820 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  BAMF_RS20250 (BAMF_0006) gyrB 4877..6793 (+) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BAMF_RS20255 (BAMF_0007) gyrA 7010..9469 (+) 2460 WP_013350726.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=38448 BAMF_RS20240 WP_013350724.1 3445..4557(+) (recF) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=38448 BAMF_RS20240 WP_013350724.1 3445..4557(+) (recF) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949

Multiple sequence alignment