Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   CVCAS_RS02000 Genome accession   NC_017486
Coordinates   390625..391407 (+) Length   260 a.a.
NCBI ID   WP_003131572.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 385625..396407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS01975 (CVCAS_0378) vicX 385648..386460 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  CVCAS_RS01980 (CVCAS_0379) vicK 386631..388073 (-) 1443 WP_014570382.1 cell wall metabolism sensor histidine kinase WalK Regulator
  CVCAS_RS01985 (CVCAS_0380) yycF 388066..388767 (-) 702 WP_003131580.1 response regulator YycF -
  CVCAS_RS01990 (CVCAS_0381) tmk 388945..389580 (+) 636 WP_003131575.1 dTMP kinase -
  CVCAS_RS01995 (CVCAS_0382) - 389713..390573 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  CVCAS_RS02000 (CVCAS_0383) yaaT 390625..391407 (+) 783 WP_003131572.1 stage 0 sporulation family protein Regulator
  CVCAS_RS02005 (CVCAS_0384) yabA 391400..391726 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  CVCAS_RS02010 (CVCAS_0385) rsmI 391726..392601 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CVCAS_RS02015 (CVCAS_0386) - 392679..392870 (-) 192 WP_003131566.1 hypothetical protein -
  CVCAS_RS02020 (CVCAS_0387) mvk 392933..393865 (-) 933 WP_003131564.1 mevalonate kinase -
  CVCAS_RS02025 (CVCAS_0388) mvaD 394171..395127 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  CVCAS_RS02030 (CVCAS_0389) - 395114..396103 (+) 990 WP_003131562.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29804.21 Da        Isoelectric Point: 5.4775

>NTDB_id=38442 CVCAS_RS02000 WP_003131572.1 390625..391407(+) (yaaT) [Lactococcus lactis subsp. lactis CV56]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNELNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=38442 CVCAS_RS02000 WP_003131572.1 390625..391407(+) (yaaT) [Lactococcus lactis subsp. lactis CV56]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATGA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385