Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FBAL_RS18650 Genome accession   NC_014541
Coordinates   4121503..4123020 (+) Length   505 a.a.
NCBI ID   WP_013347153.1    Uniprot ID   -
Organism   Ferrimonas balearica DSM 9799     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4116503..4128020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBAL_RS18630 (Fbal_3648) - 4117179..4118150 (-) 972 WP_013347149.1 branched-chain amino acid transaminase -
  FBAL_RS18635 (Fbal_3649) ilvM 4118172..4118435 (-) 264 WP_013347150.1 acetolactate synthase 2 small subunit -
  FBAL_RS18640 (Fbal_3650) ilvG 4118432..4120078 (-) 1647 WP_013347151.1 acetolactate synthase 2 catalytic subunit -
  FBAL_RS18645 (Fbal_3651) ilvC 4120083..4121081 (-) 999 WP_013347152.1 ketol-acid reductoisomerase -
  FBAL_RS18650 (Fbal_3652) comM 4121503..4123020 (+) 1518 WP_013347153.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FBAL_RS18655 (Fbal_3653) - 4123098..4123988 (+) 891 WP_013347154.1 acyltransferase -
  FBAL_RS18660 (Fbal_3654) - 4123989..4124945 (+) 957 WP_013347155.1 acyltransferase -
  FBAL_RS20030 (Fbal_3655) - 4124875..4125375 (-) 501 WP_013347156.1 DUF523 domain-containing protein -
  FBAL_RS18665 (Fbal_3656) - 4125569..4126237 (+) 669 WP_013347157.1 GntR family transcriptional regulator -
  FBAL_RS18670 (Fbal_3657) prpB 4126234..4127106 (+) 873 WP_013347158.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53258.21 Da        Isoelectric Point: 9.1184

>NTDB_id=38439 FBAL_RS18650 WP_013347153.1 4121503..4123020(+) (comM) [Ferrimonas balearica DSM 9799]
MSLSRVLSRGQLGIEAPRVTVEVHLGGGLPSFTIVGLPEASVRESRERVRAALQMAGFEFPARRITVNLAPADLPKQGGR
FDLPIALGILAASKQLPDICLHNREFYGELSLSGALRPIPGVLPAIVAGHQAGHRLYLPEENGPEAALVSDADTQLSPSL
LALVAGLLGQQPLPGPPAASAPPQPSEHCLSDIIGQGHAKRALMIAAAGHHHLLLMGPPGTGKTLLASRLASLLPPLTTE
QALAVAAIHSVAGMSRTPAQLHQRPFRGPHHSSSAASLVGGGSIPQPGEISLAHHGVLFLDELPEFARTVLDSLREPLES
GEVVISRASAKLTFPAQFQLVAAMNPAPSGETGQHSRDTPEQIRRYLSRLSGPFLDRFDLTIEVPRLPPGSLTQGQREGP
TSDEVRALVAAARQQALTRQGCLNQALAGHRLGPGVGIPAAGLQYAERAVSKLGLSVRAFHRILRVSRTIADLAGEDQVG
KAHMAEALGYRAMDRLLKELSSMTG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=38439 FBAL_RS18650 WP_013347153.1 4121503..4123020(+) (comM) [Ferrimonas balearica DSM 9799]
ATGAGTCTTTCCCGTGTGTTAAGTCGTGGCCAGTTGGGCATCGAAGCACCCCGGGTCACGGTGGAAGTTCACCTGGGCGG
TGGCTTGCCCAGTTTTACCATTGTCGGTCTGCCCGAAGCCTCGGTGCGGGAGTCCCGCGAGCGGGTTCGGGCCGCCCTGC
AGATGGCGGGGTTTGAGTTTCCGGCCCGACGGATTACCGTCAATCTGGCCCCCGCGGATCTGCCCAAACAGGGGGGGCGG
TTCGACCTGCCCATCGCTCTGGGAATTCTTGCCGCATCAAAGCAACTTCCCGACATTTGCCTGCACAATCGTGAATTTTA
TGGCGAACTCAGCCTGTCCGGCGCCCTGCGCCCCATCCCCGGAGTGCTGCCCGCTATTGTCGCCGGCCATCAGGCCGGTC
ACCGTCTCTATCTGCCCGAAGAAAATGGCCCGGAAGCGGCCCTGGTCAGCGACGCCGATACCCAGCTCAGTCCCTCCCTG
CTGGCGCTGGTGGCCGGGTTATTGGGGCAACAGCCCCTGCCCGGCCCTCCGGCTGCCAGTGCACCGCCACAGCCGAGTGA
ACACTGCCTGAGCGACATCATCGGTCAGGGCCACGCCAAGCGGGCCCTGATGATCGCCGCCGCGGGTCATCACCATCTCT
TGCTGATGGGGCCTCCAGGCACCGGAAAAACCCTGTTGGCAAGCCGACTGGCCAGCCTGTTGCCCCCGCTGACCACCGAA
CAGGCTCTGGCCGTGGCAGCAATTCACTCGGTAGCAGGGATGAGCCGTACGCCGGCTCAACTCCATCAACGGCCATTTCG
GGGACCTCACCATTCCAGCTCTGCGGCTTCCCTGGTGGGGGGCGGCAGCATTCCTCAACCCGGGGAGATCTCTCTGGCCC
ACCACGGCGTTCTGTTTCTCGATGAACTGCCGGAGTTTGCCCGCACTGTGCTGGACAGCCTCAGAGAGCCCCTTGAAAGC
GGCGAAGTGGTGATCTCCCGGGCCAGCGCCAAGCTGACGTTTCCGGCCCAGTTCCAGCTGGTGGCCGCCATGAACCCTGC
TCCCTCCGGCGAAACCGGCCAGCACAGCCGGGATACCCCGGAGCAGATCCGACGCTACCTCTCCCGCCTCTCCGGCCCCT
TCCTAGACCGTTTCGATCTGACCATTGAGGTGCCCCGCCTGCCCCCCGGCAGCCTGACTCAGGGGCAACGTGAGGGCCCC
ACCAGTGACGAGGTCCGGGCCTTGGTGGCAGCAGCGCGACAGCAGGCGCTGACCCGCCAGGGCTGTCTCAATCAGGCGCT
TGCCGGCCATCGGCTGGGCCCCGGTGTGGGGATCCCGGCAGCGGGCTTGCAGTACGCCGAACGGGCCGTCAGTAAGCTGG
GATTATCGGTGCGTGCCTTTCACCGCATCCTGCGGGTTTCCCGGACCATCGCCGATCTGGCGGGTGAAGATCAGGTGGGC
AAAGCCCATATGGCGGAAGCGCTGGGTTACCGGGCGATGGATCGTTTACTGAAAGAGTTGTCATCAATGACTGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.582

100

0.57
  comM Vibrio cholerae strain A1552

55.929

100

0.56
  comM Glaesserella parasuis strain SC1401

55.336

100

0.554
  comM Vibrio campbellii strain DS40M4

53.346

100

0.537
  comM Legionella pneumophila str. Paris

46.906

99.208

0.465
  comM Legionella pneumophila strain ERS1305867

46.906

99.208

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.434

Multiple sequence alignment