Detailed information NTG0384403

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FYK34_RS19230
• Genome accession: NZ_CP043473
• Coordinates: 4055333..4056460 (-)
• Length: 375 a.a.
• NCBI ID: WP_149299330.1
• Uniprot ID: A0A5C1DLS8
• Organism: Chromobacterium paludis strain IIBBL 257-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4050333..4061460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYK34_RS19210 (FYK34_19210)	-	4050856..4052679 (+)	1824	WP_231137317.1	PglL family O-oligosaccharyltransferase	-
FYK34_RS19215 (FYK34_19215)	rpoH	4052740..4053603 (-)	864	WP_149299324.1	RNA polymerase sigma factor RpoH	-
FYK34_RS19220 (FYK34_19220)	ftsX	4053718..4054626 (-)	909	WP_149299326.1	permease-like cell division protein FtsX	-
FYK34_RS19225 (FYK34_19225)	ftsE	4054623..4055276 (-)	654	WP_149299328.1	cell division ATP-binding protein FtsE	-
FYK34_RS19230 (FYK34_19230)	pilA	4055333..4056460 (-)	1128	WP_149299330.1	signal recognition particle-docking protein FtsY	Machinery gene
FYK34_RS19235 (FYK34_19235)	rsmD	4056685..4057245 (+)	561	WP_149299332.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FYK34_RS19240 (FYK34_19240)	-	4057343..4057594 (+)	252	WP_149299334.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FYK34_RS19260 (FYK34_19260)	tuf	4058085..4059275 (+)	1191	WP_149299336.1	elongation factor Tu	-
FYK34_RS19270 (FYK34_19270)	secE	4059423..4059776 (+)	354	WP_149299339.1	preprotein translocase subunit SecE	-
FYK34_RS19275 (FYK34_19275)	nusG	4059779..4060312 (+)	534	WP_149299341.1	transcription termination/antitermination protein NusG	-
FYK34_RS19280 (FYK34_19280)	rplK	4060413..4060844 (+)	432	WP_149299343.1	50S ribosomal protein L11	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39633.65 Da
• Isoelectric Point: 5.8824

>NTDB_id=384403 FYK34_RS19230 WP_149299330.1 4055333..4056460(-) (pilA) [Chromobacterium paludis strain IIBBL 257-1]
MFSFFKKKPKPIETPASEAPAQTPSTPATDIAEPTQTEASPAAPTLATPPAPAPAEPMSAASAPPATEPAPLKKMSWTER
LKAGLAKTRDKLGKSLAGVFGGGKIDEDLYEELETVLLTADMGMDATVHLLGDVRERVSLKGLKDASELKGALKDSLQDL
IGPLEVPLNVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQGGD
SAAVCYDAIQAAVARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVKAFDDALG
LTGLILTKLDGTAKGGVIAAIAKQRPVPLRFIGVGESIDDLRPFNSRDYIDALFE

Nucleotide

• Length: 1128 bp

>NTDB_id=384403 FYK34_RS19230 WP_149299330.1 4055333..4056460(-) (pilA) [Chromobacterium paludis strain IIBBL 257-1]
ATGTTTAGCTTCTTCAAGAAAAAGCCCAAGCCAATCGAAACGCCCGCCAGCGAAGCGCCGGCGCAGACGCCAAGCACGCC
GGCAACGGATATCGCAGAGCCGACGCAAACCGAAGCCTCCCCGGCCGCCCCCACCCTCGCCACGCCGCCGGCACCGGCGC
CAGCCGAGCCCATGTCTGCCGCCTCCGCCCCGCCTGCGACCGAACCGGCGCCGCTGAAGAAAATGAGCTGGACCGAGCGT
CTGAAGGCCGGCCTGGCCAAAACCCGAGACAAGCTGGGCAAATCGCTGGCCGGCGTGTTCGGCGGCGGCAAGATAGACGA
AGACCTGTATGAAGAACTGGAAACGGTGCTGCTGACCGCCGACATGGGCATGGATGCCACCGTCCATTTGCTGGGCGATG
TGCGCGAGCGCGTGTCGCTGAAGGGGCTGAAGGACGCGTCCGAGCTGAAAGGCGCGCTGAAGGATTCGCTGCAGGATCTG
ATCGGCCCGCTGGAAGTGCCGCTCAATGTGGAGGGCAAGAAGCCTTTCGTGATCATGATGACCGGCGTCAACGGCGCCGG
CAAAACCACCTCCATCGGCAAGTTGGCCAAGTACTACCAGAGCCAGGGCAAGAGCGTGTTGCTGGCCGCCGGCGACACCT
TCCGCGCCGCCGCGCGCGAACAGTTGATCGCCTGGGGCGAGCGCAACAACGTCACCGTGATCGCGCAGCAAGGCGGCGAC
TCCGCCGCCGTATGCTATGACGCGATCCAGGCCGCCGTCGCCCGCGGCATCGACATCGTACTGGCCGACACCGCCGGCCG
CCTGCCGACGCAGCTGCACCTGATGGAGGAAATCAAAAAGGTCAAGCGCGTGATACAGAAAGCGCTGCCGGACGCGCCGC
ATGAAGTGGTGCTGGTGCTGGACGCCAACATCGGCCAGAACACCGTCAATCAGGTCAAGGCCTTCGACGACGCGCTGGGC
CTGACCGGCTTGATCCTGACCAAGCTGGACGGCACGGCCAAGGGCGGCGTGATCGCAGCCATCGCCAAGCAACGTCCCGT
TCCGCTGCGCTTCATCGGCGTGGGCGAGAGCATAGACGACTTGCGGCCGTTCAACAGCCGCGACTACATCGACGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (91-157)

• SRP54-type protein, GTPase domain (SRP54) (175-374)

3D structure

• AlphaFold DB: A0A5C1DLS8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	62.768	100	0.701