Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HGO96_RS12520 Genome accession   NZ_CP051484
Coordinates   2576052..2576648 (+) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain NGA71     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2571052..2581648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS12490 (HGO96_02125) treR 2571979..2572707 (+) 729 WP_054190394.1 trehalose operon repressor -
  HGO96_RS12500 (HGO96_02135) - 2573108..2573209 (+) 102 WP_054190393.1 hypothetical protein -
  HGO96_RS12505 (HGO96_02140) - 2573348..2573872 (+) 525 WP_153145635.1 N-acetyltransferase -
  HGO96_RS12510 (HGO96_02145) dnaX 2573941..2575638 (+) 1698 WP_054190391.1 DNA polymerase III subunit gamma/tau -
  HGO96_RS12515 (HGO96_02150) - 2575728..2576045 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  HGO96_RS12520 (HGO96_02155) recR 2576052..2576648 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  HGO96_RS12525 (HGO96_02160) - 2576856..2576952 (+) 97 Protein_2442 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=384383 HGO96_RS12520 WP_000559156.1 2576052..2576648(+) (recR) [Staphylococcus aureus strain NGA71]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=384383 HGO96_RS12520 WP_000559156.1 2576052..2576648(+) (recR) [Staphylococcus aureus strain NGA71]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAATTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGCTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATATAAAGGTTTATATCATGTATT
ACATGGGTCTATTTCTCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGTGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGTTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475