Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FYK34_RS06050 Genome accession   NZ_CP043473
Coordinates   1329950..1330744 (+) Length   264 a.a.
NCBI ID   WP_149295529.1    Uniprot ID   A0A5C1DGS2
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324950..1335744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS06020 (FYK34_06020) - 1325083..1325805 (-) 723 WP_149295523.1 metallophosphoesterase -
  FYK34_RS06025 (FYK34_06025) - 1325834..1326487 (-) 654 WP_149295524.1 HD domain-containing protein -
  FYK34_RS06030 (FYK34_06030) - 1326542..1327396 (-) 855 WP_149295525.1 GNAT family N-acetyltransferase -
  FYK34_RS06035 (FYK34_06035) - 1327393..1328001 (-) 609 WP_149295526.1 AraC family transcriptional regulator -
  FYK34_RS06040 (FYK34_06040) pgeF 1328130..1328867 (-) 738 WP_149295527.1 peptidoglycan editing factor PgeF -
  FYK34_RS06045 (FYK34_06045) rluD 1328857..1329951 (-) 1095 WP_149295528.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FYK34_RS06050 (FYK34_06050) comL 1329950..1330744 (+) 795 WP_149295529.1 outer membrane protein assembly factor BamD Machinery gene
  FYK34_RS06055 (FYK34_06055) - 1330802..1331134 (-) 333 WP_149295530.1 hypothetical protein -
  FYK34_RS06060 (FYK34_06060) - 1331393..1332895 (+) 1503 WP_149295531.1 sodium:alanine symporter family protein -
  FYK34_RS06065 (FYK34_06065) - 1332995..1333585 (+) 591 WP_149295532.1 ANTAR domain-containing response regulator -
  FYK34_RS06070 (FYK34_06070) - 1333595..1334719 (+) 1125 WP_149295533.1 CmpA/NrtA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30342.49 Da        Isoelectric Point: 8.8540

>NTDB_id=384381 FYK34_RS06050 WP_149295529.1 1329950..1330744(+) (comL) [Chromobacterium paludis strain IIBBL 257-1]
MKRYVVAAMLVMVGLAGCASTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLESRFPYGRYAQQAQMDLAYTHY
KDGEPEQAIAAADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAARESFAAFRELTTRFPNSAYA
PDAKAKMNRLVDALGGNEMHVARYYMKRGAYLAAASRAQGVVKDFSNTKYPEEALAIMVAAYDKLQLPKLRDDARRVLAL
NYPHSVYLNKPWQVQEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=384381 FYK34_RS06050 WP_149295529.1 1329950..1330744(+) (comL) [Chromobacterium paludis strain IIBBL 257-1]
ATGAAAAGATACGTTGTTGCTGCAATGTTGGTGATGGTGGGGCTTGCCGGCTGCGCCTCCACGGAAACCTACGACGAAAC
GCGCGGCTGGACCGTGGAGAAGCTGTACTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TCTACGAAACGCTGGAATCGCGCTTTCCGTATGGCCGCTACGCGCAGCAGGCGCAAATGGACCTGGCCTACACCCATTAC
AAGGATGGCGAGCCTGAGCAAGCCATCGCCGCGGCTGACCGCTTCATCAAGCTGCATCCGACGCATCCCAACCTCGACTA
CATCTATTATCTGAAAGGCTTGGTGTATTACAACGACGATTCTGGCCTGCTGGCGAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGCGCCGCCCGCGAATCCTTCGCTGCCTTCCGCGAACTGACCACGCGTTTCCCCAACAGCGCTTACGCG
CCTGACGCCAAGGCCAAGATGAACCGGCTGGTGGATGCGCTGGGCGGCAACGAGATGCATGTGGCCCGCTACTACATGAA
GCGCGGCGCGTATCTGGCGGCGGCCAGTCGCGCCCAGGGCGTGGTGAAGGACTTCTCTAACACCAAGTACCCGGAAGAGG
CGCTGGCCATCATGGTGGCGGCCTACGACAAGCTGCAGCTGCCCAAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGTTG
AACTATCCGCATAGCGTCTACCTGAACAAGCCGTGGCAGGTGCAGGAAATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DGS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

56.929

100

0.576

Multiple sequence alignment