Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HGO96_RS10390 Genome accession   NZ_CP051484
Coordinates   2109087..2110199 (+) Length   370 a.a.
NCBI ID   WP_000775113.1    Uniprot ID   P68863
Organism   Staphylococcus aureus strain NGA71     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2104087..2115199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGO96_RS10365 (HGO96_13650) rnpA 2104350..2104703 (-) 354 WP_001789343.1 ribonuclease P protein component -
  HGO96_RS10370 (HGO96_13655) rpmH 2104824..2104961 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  HGO96_RS10375 (HGO96_00005) dnaA 2105692..2107053 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  HGO96_RS10380 (HGO96_00010) dnaN 2107331..2108464 (+) 1134 WP_000969810.1 DNA polymerase III subunit beta -
  HGO96_RS10385 (HGO96_00015) yaaA 2108845..2109090 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  HGO96_RS10390 (HGO96_00020) recF 2109087..2110199 (+) 1113 WP_000775113.1 DNA replication/repair protein RecF Machinery gene
  HGO96_RS10395 (HGO96_00025) gyrB 2110209..2112143 (+) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HGO96_RS10400 (HGO96_00030) gyrA 2112179..2114842 (+) 2664 WP_153145596.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=384378 HGO96_RS10390 WP_000775113.1 2109087..2110199(+) (recF) [Staphylococcus aureus strain NGA71]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=384378 HGO96_RS10390 WP_000775113.1 2109087..2110199(+) (recF) [Staphylococcus aureus strain NGA71]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGAAGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTATCGCTGAATTATTTACCTAGCCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATCAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P68863

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497