Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   MPET_RS09215 Genome accession   NC_014507
Coordinates   1849459..1850469 (+) Length   336 a.a.
NCBI ID   WP_013329750.1    Uniprot ID   E1RIA8
Organism   Methanolacinia petrolearia DSM 11571     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844459..1855469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPET_RS09200 (Mpet_1818) - 1845084..1845698 (+) 615 WP_013329747.1 hypothetical protein -
  MPET_RS15660 (Mpet_1819) - 1845722..1848547 (+) 2826 WP_013329748.1 type II/IV secretion system ATPase subunit -
  MPET_RS09210 (Mpet_1820) epdJ 1848534..1849457 (+) 924 WP_013329749.1 type II secretion system F family protein Machinery gene
  MPET_RS09215 (Mpet_1821) epdK 1849459..1850469 (+) 1011 WP_013329750.1 type II secretion system F family protein Machinery gene
  MPET_RS09220 (Mpet_1822) yciH 1850541..1850846 (-) 306 WP_013329751.1 stress response translation initiation inhibitor YciH -
  MPET_RS09225 (Mpet_1823) - 1851055..1852521 (+) 1467 WP_048130806.1 cobyric acid synthase -
  MPET_RS09230 (Mpet_1824) - 1852573..1852920 (+) 348 WP_148222215.1 type II secretion system protein E -
  MPET_RS09235 (Mpet_1825) - 1852913..1853191 (-) 279 WP_013329754.1 hypothetical protein -
  MPET_RS14540 (Mpet_1826) - 1853172..1853660 (-) 489 WP_013329755.1 YkgJ family cysteine cluster protein -
  MPET_RS09245 (Mpet_1827) - 1854031..1855209 (+) 1179 WP_013329756.1 sugar phosphate nucleotidyltransferase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37157.27 Da        Isoelectric Point: 5.0551

>NTDB_id=38402 MPET_RS09215 WP_013329750.1 1849459..1850469(+) (epdK) [Methanolacinia petrolearia DSM 11571]
MGLFGKKKNEDAIPGETDLEQIEIFEKIDSKRKRREGFNRILEDPVKVLTEKPENILIVSAPIALLFFVFGFISVISNYG
IYSLLNSTLIDDIFVITILIMLIPLAFLDTKESMRTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIK
KLDNEVSWNIPFINAIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERRNNMLIYIVIVLVS
FLVFLLVIAIMTSTFLDTMAEAGAAVASSGTDTSGLSFGGAIDMDFYRRLFSHAAMIQAFFSGLVAGQMGEGRAIAGLKY
SLIMLIIAWISFRFFI

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=38402 MPET_RS09215 WP_013329750.1 1849459..1850469(+) (epdK) [Methanolacinia petrolearia DSM 11571]
ATGGGACTATTTGGGAAGAAAAAAAATGAAGATGCCATCCCCGGGGAGACAGACCTGGAACAAATCGAGATATTTGAAAA
GATCGATTCAAAGAGGAAACGAAGGGAAGGGTTCAACAGAATTCTTGAAGATCCGGTAAAAGTACTGACTGAAAAGCCCG
AAAACATTCTTATTGTCTCCGCACCGATAGCGCTGCTGTTCTTCGTCTTCGGGTTTATATCGGTCATATCGAACTACGGA
ATATACTCCCTGCTGAATTCGACGTTAATTGACGACATCTTCGTGATCACAATCCTCATAATGCTCATACCCCTTGCATT
TCTCGATACCAAAGAATCGATGAGGACACGAAATATCGAGGTTGCGCTGCCGAATTTCTTCAGGGATGTCGCAGGGATGA
ACGAGAGCGGAATGACACTTCCAAACGCCATCCACACCGTTTCGGACGGAGATTACGGAACGCTTACCCCGTATATAAAA
AAGCTCGACAACGAAGTTTCGTGGAATATTCCGTTTATAAACGCCATACACAGGTTTGGTGAAAGGCTGGGGACTCCGCT
CGCGAAAAGAAGTGTGGATCTTATCGCAAAGGCAAGCCAGGCCGGCGGAGATGTAAGCGAGGTGTTAAGGGCTGCTGCAA
ACGATTCATACGAATTCGTCAGTCTTGCAACCGAAAGGCGGAACAATATGCTGATCTATATCGTTATAGTTCTTGTATCG
TTTCTTGTCTTCCTTCTGGTAATTGCGATTATGACTAGTACGTTCCTCGACACCATGGCCGAAGCCGGAGCGGCAGTTGC
ATCCTCGGGAACAGACACCTCAGGACTCTCCTTCGGCGGAGCCATAGATATGGACTTCTACAGGAGGCTGTTCTCCCATG
CCGCAATGATCCAGGCATTTTTCTCCGGACTTGTAGCAGGTCAGATGGGTGAAGGAAGGGCAATAGCCGGCCTGAAATAT
TCATTGATTATGCTGATAATCGCGTGGATTTCGTTCAGGTTCTTCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(126-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E1RIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

60.703

93.155

0.565

Multiple sequence alignment