Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MPET_RS09210 Genome accession   NC_014507
Coordinates   1848534..1849457 (+) Length   307 a.a.
NCBI ID   WP_013329749.1    Uniprot ID   E1RIA7
Organism   Methanolacinia petrolearia DSM 11571     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843534..1854457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPET_RS09190 (Mpet_1816) hisI 1843538..1843924 (-) 387 WP_048131083.1 phosphoribosyl-AMP cyclohydrolase -
  MPET_RS09195 (Mpet_1817) - 1843927..1844919 (-) 993 WP_013329746.1 A24 family peptidase C-terminal domain-containing protein -
  MPET_RS09200 (Mpet_1818) - 1845084..1845698 (+) 615 WP_013329747.1 hypothetical protein -
  MPET_RS15660 (Mpet_1819) - 1845722..1848547 (+) 2826 WP_013329748.1 type II/IV secretion system ATPase subunit -
  MPET_RS09210 (Mpet_1820) epdJ 1848534..1849457 (+) 924 WP_013329749.1 type II secretion system F family protein Machinery gene
  MPET_RS09215 (Mpet_1821) epdK 1849459..1850469 (+) 1011 WP_013329750.1 type II secretion system F family protein Machinery gene
  MPET_RS09220 (Mpet_1822) yciH 1850541..1850846 (-) 306 WP_013329751.1 stress response translation initiation inhibitor YciH -
  MPET_RS09225 (Mpet_1823) - 1851055..1852521 (+) 1467 WP_048130806.1 cobyric acid synthase -
  MPET_RS09230 (Mpet_1824) - 1852573..1852920 (+) 348 WP_148222215.1 type II secretion system protein E -
  MPET_RS09235 (Mpet_1825) - 1852913..1853191 (-) 279 WP_013329754.1 hypothetical protein -
  MPET_RS14540 (Mpet_1826) - 1853172..1853660 (-) 489 WP_013329755.1 YkgJ family cysteine cluster protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34575.47 Da        Isoelectric Point: 8.5223

>NTDB_id=38401 MPET_RS09210 WP_013329749.1 1848534..1849457(+) (epdJ) [Methanolacinia petrolearia DSM 11571]
MNSYERFCFSIFGKRAKKKREDYLTLRNDMIRARMKTPYEAYISTAYFSSIIAGLMAAILFSLITYLLRLPEIFVYKGNV
PDIFIEMSKYSLILGTVFVLIISLVVVGGLTYSIFLIYPSILAGDRRRNIDSTLPYAINYITAMSTAGITPAEVFRLLGN
SEIYGESAVEARYITREIDVFGKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTF
LETLGLISESYVTALVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVILIDAMTPEM

Nucleotide


Download         Length: 924 bp        

>NTDB_id=38401 MPET_RS09210 WP_013329749.1 1848534..1849457(+) (epdJ) [Methanolacinia petrolearia DSM 11571]
ATGAACAGTTATGAGAGATTCTGCTTCTCGATATTTGGAAAAAGAGCGAAAAAGAAGAGAGAAGATTATCTCACCCTGAG
AAACGACATGATCAGGGCCAGGATGAAAACTCCATATGAGGCCTATATTTCAACCGCCTACTTCTCATCGATCATTGCAG
GATTGATGGCTGCAATCCTCTTCTCGCTGATTACATATCTGCTGAGGCTTCCCGAGATTTTCGTGTATAAGGGAAATGTC
CCGGATATATTTATTGAAATGAGCAAATACAGCCTGATTTTAGGCACCGTGTTCGTTCTGATTATATCATTGGTTGTAGT
CGGGGGGCTGACATATTCGATCTTTCTTATATACCCAAGCATCCTGGCCGGCGACAGAAGGAGAAACATAGACTCCACAC
TTCCGTACGCCATAAATTACATTACCGCCATGTCAACGGCTGGCATTACGCCTGCAGAAGTGTTCAGGCTTCTTGGCAAC
AGCGAAATCTACGGCGAAAGTGCAGTGGAGGCCAGGTACATAACGAGAGAGATCGACGTCTTCGGAAAGGACCTGCTGGA
CGCCCTGAGACTGGCAGGCCAGTACACACCCAGCGACAGAATGAGGGACTTCCTACAGGGTGCAATTGCAAGTATCTCGA
GTGGAAGCAATCTCACGGAATATTTCAGGAACAAATCGGAGCAGTACATGAAGGAGAACCGGCAGACGCAAAAGACTTTC
CTCGAAACTCTCGGACTTATCTCCGAATCTTATGTAACCGCCCTTGTCGCAGGAACGCTTTTCCTGATTATACTGCAGTC
TATAATGTCGACTATCAGCAGTACTTCGAGCCCAATGTTTTTGTACGTCGTAATATACGGGATAATTCCGCTGGGGAGTA
TAATGTTCGTGATTTTAATTGATGCAATGACTCCGGAGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E1RIA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

67.427

100

0.674

Multiple sequence alignment