Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CVOLT_RS04630 Genome accession   NZ_CP043428
Coordinates   879812..880465 (+) Length   217 a.a.
NCBI ID   WP_039665654.1    Uniprot ID   -
Organism   Campylobacter volucris strain LMG 24380     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 874812..885465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOLT_RS04605 (CVOLT_0912) - 874912..876435 (-) 1524 WP_039665649.1 inorganic phosphate transporter -
  CVOLT_RS04610 (CVOLT_0913) pdxA 876478..877578 (-) 1101 WP_039665650.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CVOLT_RS04615 (CVOLT_0914) - 877575..878342 (-) 768 WP_039665651.1 pyridoxine 5'-phosphate synthase -
  CVOLT_RS04620 (CVOLT_0915) - 878398..879372 (+) 975 WP_039665652.1 exopolyphosphatase, Ppx/GppA family -
  CVOLT_RS04625 (CVOLT_0916) - 879372..879815 (+) 444 WP_039665653.1 GatB/YqeY domain-containing protein -
  CVOLT_RS04630 (CVOLT_0917) CJE0566 879812..880465 (+) 654 WP_039665654.1 DNA/RNA endonuclease G Regulator
  CVOLT_RS04635 (CVOLT_0918) dnaK 880487..882355 (-) 1869 WP_039665655.1 molecular chaperone DnaK -
  CVOLT_RS04640 (CVOLT_0919) grpE 882377..882886 (-) 510 WP_039665656.1 nucleotide exchange factor GrpE -
  CVOLT_RS04645 (CVOLT_0920) - 882883..883665 (-) 783 WP_039665657.1 HrcA family transcriptional regulator -
  CVOLT_RS08110 - 883904..884035 (+) 132 WP_256375836.1 hypothetical protein -
  CVOLT_RS04650 (CVOLT_0921) - 884024..884653 (-) 630 WP_052243176.1 hypothetical protein -
  CVOLT_RS04655 (CVOLT_0922) - 884650..884886 (-) 237 WP_039665658.1 CDK5 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25964.99 Da        Isoelectric Point: 9.9426

>NTDB_id=384006 CVOLT_RS04630 WP_039665654.1 879812..880465(+) (CJE0566) [Campylobacter volucris strain LMG 24380]
MKKILSLCVLALSSFAYTQYELDPSFKKYFQNCSLLMDKYYYINCYDYTYKGTKAIAYKLEARILNQGHIKKRPKFSEDT
NIPKKYRTYWQDYIKSGYTRGHVVPNQSMNATPQAQLSTFLMSNVTPQKKDINAEIWNEIEQRERYLAKKNQELQVLNLI
LYDENPKRIKNNIAIPSFYIKILKAKNYSECYKVPNNDNFARFDRKYFKENCKKYIK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=384006 CVOLT_RS04630 WP_039665654.1 879812..880465(+) (CJE0566) [Campylobacter volucris strain LMG 24380]
ATGAAAAAAATACTTTCTTTATGTGTTTTAGCTTTAAGTTCTTTTGCATACACCCAATACGAGCTTGACCCTAGTTTTAA
AAAGTATTTTCAAAACTGCTCATTGTTGATGGATAAGTATTATTATATTAATTGCTATGATTATACTTATAAAGGCACAA
AAGCAATAGCTTACAAACTTGAAGCTAGAATTTTAAACCAAGGACATATTAAAAAACGCCCTAAATTTTCAGAAGATACT
AATATACCGAAAAAATATAGAACTTATTGGCAAGATTATATAAAAAGTGGCTATACAAGAGGCCATGTAGTACCTAATCA
ATCCATGAATGCTACTCCACAAGCTCAGCTTAGTACTTTTTTAATGAGCAATGTTACTCCTCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATTGAGCAAAGAGAAAGATATCTAGCTAAGAAAAACCAAGAATTGCAAGTATTAAATTTAATA
CTTTATGATGAAAATCCAAAACGCATTAAAAATAATATAGCTATACCAAGTTTTTATATAAAAATTTTAAAAGCAAAAAA
TTATAGCGAATGTTATAAAGTCCCAAATAATGATAATTTTGCAAGATTTGATAGAAAGTATTTCAAAGAAAATTGTAAAA
AATATATAAAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment