Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLCT_RS04465 Genome accession   NZ_CP043426
Coordinates   855919..856572 (+) Length   217 a.a.
NCBI ID   WP_149062389.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain LMG 21009     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 850919..861572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLCT_RS04440 (CLCT_0882) - 851022..852542 (-) 1521 WP_039668477.1 inorganic phosphate transporter -
  CLCT_RS04445 (CLCT_0883) pdxA 852589..853689 (-) 1101 WP_149062386.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLCT_RS04450 (CLCT_0884) - 853686..854453 (-) 768 WP_149062387.1 pyridoxine 5'-phosphate synthase -
  CLCT_RS04455 (CLCT_0885) - 854509..855468 (+) 960 WP_149062388.1 Ppx/GppA family phosphatase -
  CLCT_RS04460 (CLCT_0886) - 855479..855922 (+) 444 WP_039668481.1 GatB/YqeY domain-containing protein -
  CLCT_RS04465 (CLCT_0887) CJE0566 855919..856572 (+) 654 WP_149062389.1 DNA/RNA non-specific endonuclease Regulator
  CLCT_RS04470 (CLCT_0888) dnaK 856602..858464 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLCT_RS04475 (CLCT_0889) grpE 858487..858996 (-) 510 WP_039668484.1 nucleotide exchange factor GrpE -
  CLCT_RS04480 (CLCT_0890) - 858993..859775 (-) 783 WP_149062390.1 HrcA family transcriptional regulator -
  CLCT_RS07780 - 860015..860146 (+) 132 WP_256374638.1 hypothetical protein -
  CLCT_RS04485 (CLCT_0891) - 860135..860764 (-) 630 WP_149062391.1 hypothetical protein -
  CLCT_RS04490 (CLCT_0892) - 860761..860997 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=383974 CLCT_RS04465 WP_149062389.1 855919..856572(+) (CJE0566) [Campylobacter lari subsp. concheus strain LMG 21009]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=383974 CLCT_RS04465 WP_149062389.1 855919..856572(+) (CJE0566) [Campylobacter lari subsp. concheus strain LMG 21009]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTACACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATTGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment