Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BSR23_RS03700 Genome accession   NZ_CP043421
Coordinates   700349..700963 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 695349..705963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS03690 (BSR23_003690) aceF 696639..698525 (+) 1887 WP_031847487.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  BSR23_RS03695 (BSR23_003695) lpdA 698794..700221 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  BSR23_RS03700 (BSR23_003700) opaR 700349..700963 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  BSR23_RS03705 (BSR23_003705) hpt 701282..701812 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  BSR23_RS03710 (BSR23_003710) can 701887..702555 (-) 669 WP_005462578.1 carbonate dehydratase -
  BSR23_RS03715 (BSR23_003715) - 702840..704511 (+) 1672 Protein_591 SulP family inorganic anion transporter -
  BSR23_RS03725 (BSR23_003725) - 704763..705680 (+) 918 WP_021450010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=383922 BSR23_RS03700 WP_005479697.1 700349..700963(-) (opaR) [Vibrio parahaemolyticus strain MVP1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=383922 BSR23_RS03700 WP_005479697.1 700349..700963(-) (opaR) [Vibrio parahaemolyticus strain MVP1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGCATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment