Detailed information NTG0383918

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BSR23_RS03650
• Genome accession: NZ_CP043421
• Coordinates: 686614..687483 (-)
• Length: 289 a.a.
• NCBI ID: WP_023585958.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MVP1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 681614..692483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR23_RS03615 (BSR23_003615)	rpsP	682625..682873 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
BSR23_RS03620 (BSR23_003620)	rimM	682902..683450 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
BSR23_RS03625 (BSR23_003625)	trmD	683478..684221 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BSR23_RS03630 (BSR23_003630)	rplS	684263..684616 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
BSR23_RS03635 (BSR23_003635)	yacG	684968..685162 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
BSR23_RS03640 (BSR23_003640)	zapD	685231..685971 (-)	741	WP_015297254.1	cell division protein ZapD	-
BSR23_RS03645 (BSR23_003645)	coaE	685999..686613 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
BSR23_RS03650 (BSR23_003650)	pilD	686614..687483 (-)	870	WP_023585958.1	A24 family peptidase	Machinery gene
BSR23_RS03655 (BSR23_003655)	pilC	687548..688771 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
BSR23_RS03660 (BSR23_003660)	pilB	688795..690480 (-)	1686	WP_029815939.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BSR23_RS03665 (BSR23_003665)	pilA	690480..690938 (-)	459	WP_025536236.1	pilin	Machinery gene
BSR23_RS03670 (BSR23_003670)	nadC	691202..692089 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32421.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=383918 BSR23_RS03650 WP_023585958.1 686614..687483(-) (pilD) [Vibrio parahaemolyticus strain MVP1]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLSALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=383918 BSR23_RS03650 WP_023585958.1 686614..687483(-) (pilD) [Vibrio parahaemolyticus strain MVP1]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGGATGGGTTACGGTGATTTTA
AATTGCTGTCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446