Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R2846_RS01350 Genome accession   NC_017452
Coordinates   260764..261378 (+) Length   204 a.a.
NCBI ID   WP_014550474.1    Uniprot ID   -
Organism   Haemophilus influenzae R2846     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 255764..266378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS01325 (R2846_0262) - 256181..256699 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R2846_RS01330 (R2846_0263) aspS 256918..258684 (+) 1767 WP_014550472.1 aspartate--tRNA ligase -
  R2846_RS01335 (R2846_0264) nudB 258706..259182 (+) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  R2846_RS01340 (R2846_0265) - 259342..260082 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R2846_RS01345 (R2846_0266) ruvC 260129..260701 (+) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  R2846_RS01350 (R2846_0267) ruvA 260764..261378 (+) 615 WP_014550474.1 Holliday junction branch migration protein RuvA Machinery gene
  R2846_RS01355 (R2846_0268) ruvB 261386..262393 (+) 1008 WP_005686749.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R2846_RS01360 (R2846_0269) - 262445..262732 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  R2846_RS01365 (R2846_0270) xerD 262905..263798 (-) 894 WP_005649023.1 site-specific tyrosine recombinase XerD -
  R2846_RS01370 (R2846_0271) - 263829..264995 (-) 1167 WP_014550475.1 3-phenylpropionate MFS transporter -
  R2846_RS01375 (R2846_0272) proC 264995..265810 (-) 816 WP_014550476.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22517.29 Da        Isoelectric Point: 6.8881

>NTDB_id=38378 R2846_RS01350 WP_014550474.1 260764..261378(+) (ruvA) [Haemophilus influenzae R2846]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPALTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=38378 R2846_RS01350 WP_014550474.1 260764..261378(+) (ruvA) [Haemophilus influenzae R2846]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGCATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.407

100

0.363

Multiple sequence alignment