Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CYAN7822_RS05660 Genome accession   NC_014501
Coordinates   1274456..1276072 (-) Length   538 a.a.
NCBI ID   WP_013321279.1    Uniprot ID   -
Organism   Gloeothece verrucosa PCC 7822     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269456..1281072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS05640 (Cyan7822_1160) - 1270823..1271122 (+) 300 WP_013321274.1 type II toxin-antitoxin system HigB family toxin -
  CYAN7822_RS05645 (Cyan7822_1161) - 1271106..1271504 (+) 399 WP_013321275.1 transcriptional regulator -
  CYAN7822_RS05650 (Cyan7822_1162) - 1271694..1272110 (-) 417 WP_013321276.1 CVNH domain-containing protein -
  CYAN7822_RS05655 (Cyan7822_1163) ffh 1272345..1273808 (-) 1464 WP_013321277.1 signal recognition particle protein -
  CYAN7822_RS38595 (Cyan7822_1164) - 1274147..1274302 (+) 156 WP_013321278.1 hypothetical protein -
  CYAN7822_RS05660 (Cyan7822_1165) comA 1274456..1276072 (-) 1617 WP_013321279.1 DUF655 domain-containing protein Machinery gene
  CYAN7822_RS05665 (Cyan7822_1166) rsmD 1276085..1276624 (-) 540 WP_013321280.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CYAN7822_RS05670 (Cyan7822_1167) - 1276778..1277431 (+) 654 WP_245602698.1 SIMPL domain-containing protein -
  CYAN7822_RS05675 (Cyan7822_1168) - 1278170..1278628 (+) 459 WP_041933147.1 hypothetical protein -
  CYAN7822_RS05680 (Cyan7822_1169) - 1278767..1280818 (+) 2052 WP_013321283.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 60120.15 Da        Isoelectric Point: 8.5851

>NTDB_id=38373 CYAN7822_RS05660 WP_013321279.1 1274456..1276072(-) (comA) [Gloeothece verrucosa PCC 7822]
MLKYQRIFAGFILVLSACSHKTEIQRPKPLPQDPSLEVYFNQNQAQGADYSDPYRKIKRPGDNLEQILIDSINTAQSTVD
IAVQEFRLPNLAQALVKRHQAGVKVRVILENTYRRPFSDLTSREVQELSEREGDRYEDFFALADTNKDQKLSAEEIHQSD
ALVILRQGGIPIIDDTADGSKGSALMHHKFMIIDRNNLIVTSANFTLSDIHGDFLRSDSRGNANHLLKIKSPQLAKLFTE
EFNLLWGDGPGGKLDSLFGINKPARVPQTIALNNSEITLKFSPNSTAYPWDKSSNGLINQTLITSHSSVDLALFVFSEQQ
LANTLEKRHQKGVNIRALIDPGFAFNNYSEGLDMLGVALSNKCRYEADNHPWQSPLTSVGIPQLSPTDKLHHKFAIIDQN
TIITGSHNWSASANNQNDETLIIIKSPLVAAHFKQEFERLYQNAILGIPTYVAEKIKKDQQNCSHFSSTTSQASGGKLIN
LNTASLEELETLPGIGTSLAKKILKTRQEKPFTSLEDLQRVPGIRQGKLKKLRGKVSW

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=38373 CYAN7822_RS05660 WP_013321279.1 1274456..1276072(-) (comA) [Gloeothece verrucosa PCC 7822]
ATGTTAAAGTATCAACGAATTTTTGCCGGTTTTATTCTTGTTCTATCTGCCTGTTCCCATAAGACTGAAATTCAACGCCC
TAAACCTTTGCCGCAAGACCCTTCCCTTGAAGTTTATTTTAATCAAAATCAGGCTCAAGGAGCCGATTATAGTGATCCTT
ATCGAAAAATTAAACGCCCAGGAGATAATCTCGAACAAATTTTAATCGACAGCATCAATACAGCACAATCAACTGTTGAT
ATTGCCGTGCAAGAATTTCGTTTACCTAACCTGGCTCAAGCTTTGGTGAAACGGCATCAAGCAGGCGTTAAAGTGAGAGT
GATTTTGGAAAATACTTATCGTCGTCCTTTTAGTGATTTAACGAGTCGAGAAGTTCAAGAACTCTCGGAAAGAGAAGGCG
ATCGTTATGAGGATTTTTTCGCTTTAGCTGATACCAATAAAGACCAAAAACTCAGTGCAGAAGAAATTCATCAATCAGAT
GCTCTTGTGATTTTACGTCAGGGGGGAATTCCCATTATTGATGATACGGCTGATGGTTCAAAAGGAAGCGCGTTAATGCA
CCATAAATTTATGATTATCGATAGAAATAATCTGATCGTCACTTCAGCTAATTTTACTTTAAGTGATATTCATGGAGACT
TTTTGAGGAGCGATAGTCGAGGCAATGCTAATCATTTACTTAAAATCAAAAGCCCCCAATTAGCGAAGTTATTTACAGAA
GAATTTAATTTATTATGGGGAGACGGGCCAGGGGGTAAACTAGATAGTTTATTTGGCATCAATAAACCGGCTAGAGTTCC
TCAAACCATTGCCTTAAATAATTCCGAGATCACCCTAAAATTTTCTCCCAATTCTACGGCTTATCCTTGGGATAAAAGTA
GTAATGGATTAATTAACCAAACGCTTATTACCTCGCATTCATCAGTGGACTTAGCCTTATTTGTATTTTCTGAACAGCAA
CTCGCAAATACATTAGAAAAACGGCATCAAAAAGGAGTAAATATAAGAGCTTTAATTGACCCCGGTTTTGCCTTTAACAA
TTACAGTGAAGGGTTAGATATGTTAGGGGTTGCCCTCAGCAATAAATGCCGCTATGAAGCGGATAATCATCCTTGGCAGT
CTCCGCTAACTAGCGTAGGAATTCCTCAATTATCACCGACGGATAAATTACATCATAAATTTGCTATTATTGATCAAAAT
ACTATTATTACAGGCTCTCATAATTGGTCAGCCTCAGCCAACAACCAAAATGATGAAACCTTAATCATCATTAAAAGTCC
TTTAGTAGCAGCCCATTTTAAGCAAGAATTTGAACGTCTTTATCAAAATGCTATCTTAGGCATCCCTACTTATGTGGCAG
AAAAAATTAAAAAAGATCAACAAAACTGTTCCCATTTCTCAAGCACTACTTCTCAAGCAAGCGGCGGAAAATTAATAAAT
CTTAATACTGCCAGTCTCGAGGAATTAGAAACATTACCCGGTATAGGAACTTCTTTAGCTAAAAAAATCCTCAAAACCCG
TCAAGAAAAACCTTTTACCTCTCTAGAAGACTTGCAAAGAGTACCTGGCATTCGTCAAGGTAAACTCAAAAAGTTACGAG
GGAAAGTCTCTTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(68-246)

PLD-like domain (PLDc_2)

(301-440)

Helix-hairpin-helix motif (HHH_3)

(477-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

52.124

96.283

0.502

Multiple sequence alignment