Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYAN7822_RS05545 Genome accession   NC_014501
Coordinates   1249325..1249687 (-) Length   120 a.a.
NCBI ID   WP_041933146.1    Uniprot ID   -
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1244325..1254687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS05530 (Cyan7822_1135) - 1245907..1246206 (-) 300 WP_013321249.1 2Fe-2S iron-sulfur cluster-binding protein -
  CYAN7822_RS05535 (Cyan7822_1136) - 1246219..1248582 (-) 2364 WP_013321250.1 methyl-accepting chemotaxis protein -
  CYAN7822_RS05540 (Cyan7822_1137) - 1248804..1249301 (-) 498 WP_013321251.1 chemotaxis protein CheW -
  CYAN7822_RS05545 (Cyan7822_1138) pilH 1249325..1249687 (-) 363 WP_041933146.1 response regulator Machinery gene
  CYAN7822_RS05550 (Cyan7822_1139) - 1250075..1251055 (-) 981 WP_013321253.1 ABC transporter ATP-binding protein -
  CYAN7822_RS05555 (Cyan7822_1140) petE 1251208..1251591 (-) 384 WP_013321254.1 plastocyanin -
  CYAN7822_RS38590 (Cyan7822_1141) - 1252113..1252283 (+) 171 WP_013321255.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13327.53 Da        Isoelectric Point: 6.3210

>NTDB_id=38372 CYAN7822_RS05545 WP_041933146.1 1249325..1249687(-) (pilH) [Gloeothece verrucosa PCC 7822]
MTTVLVVEDTLSEQELISLYLRKAGYTVITANDGKEAIEKTLAQKPDVIVTDVVMPNMNGFELCRSIKKNPQTQKLPVIA
CTSKTQDLDRLWGMKQGIDVYVTKPFTPEELIRAVKSVAG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=38372 CYAN7822_RS05545 WP_041933146.1 1249325..1249687(-) (pilH) [Gloeothece verrucosa PCC 7822]
ATGACGACTGTTTTAGTGGTTGAAGACACCCTTTCAGAACAAGAATTAATCAGTCTGTATCTGCGAAAGGCAGGCTACAC
AGTGATTACTGCTAACGATGGCAAAGAAGCGATCGAAAAAACCCTCGCTCAAAAACCCGATGTGATCGTCACTGATGTCG
TTATGCCCAATATGAACGGCTTTGAACTATGTCGTAGTATCAAAAAAAATCCCCAAACTCAAAAATTACCCGTGATCGCT
TGTACTTCAAAAACGCAAGACCTTGATCGCCTTTGGGGAATGAAACAAGGCATAGATGTATATGTTACTAAACCGTTTAC
CCCAGAAGAACTCATTCGAGCCGTTAAATCAGTTGCCGGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492

Multiple sequence alignment