Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   FZE25_RS16930 Genome accession   NZ_CP043416
Coordinates   3405407..3406570 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain ONU 553     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400407..3411570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZE25_RS16900 (FZE25_16600) - 3400671..3401090 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  FZE25_RS16905 (FZE25_16605) comFC 3401164..3401853 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  FZE25_RS16910 (FZE25_16610) - 3401859..3402143 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  FZE25_RS16915 (FZE25_16615) comFA 3402201..3403586 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  FZE25_RS16920 (FZE25_16620) - 3403695..3404543 (-) 849 WP_007407483.1 DegV family protein -
  FZE25_RS16925 (FZE25_16625) degU 3404641..3405330 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FZE25_RS16930 (FZE25_16630) degS 3405407..3406570 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  FZE25_RS16935 (FZE25_16635) - 3406793..3407440 (+) 648 WP_007614107.1 YigZ family protein -
  FZE25_RS16940 (FZE25_16640) - 3407445..3408665 (+) 1221 WP_020956419.1 LCP family protein -
  FZE25_RS16945 (FZE25_16645) - 3408772..3409848 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  FZE25_RS16950 (FZE25_16650) tuaH 3409981..3411177 (-) 1197 WP_042635532.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=383712 FZE25_RS16930 WP_007407484.1 3405407..3406570(-) (degS) [Bacillus velezensis strain ONU 553]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=383712 FZE25_RS16930 WP_007407484.1 3405407..3406570(-) (degS) [Bacillus velezensis strain ONU 553]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
ATCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment