Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FZE25_RS16925 Genome accession   NZ_CP043416
Coordinates   3404641..3405330 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain ONU 553     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3399641..3410330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZE25_RS16890 (FZE25_16590) - 3399838..3400320 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FZE25_RS16895 (FZE25_16595) flgM 3400335..3400601 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FZE25_RS16900 (FZE25_16600) - 3400671..3401090 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  FZE25_RS16905 (FZE25_16605) comFC 3401164..3401853 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  FZE25_RS16910 (FZE25_16610) - 3401859..3402143 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  FZE25_RS16915 (FZE25_16615) comFA 3402201..3403586 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  FZE25_RS16920 (FZE25_16620) - 3403695..3404543 (-) 849 WP_007407483.1 DegV family protein -
  FZE25_RS16925 (FZE25_16625) degU 3404641..3405330 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FZE25_RS16930 (FZE25_16630) degS 3405407..3406570 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  FZE25_RS16935 (FZE25_16635) - 3406793..3407440 (+) 648 WP_007614107.1 YigZ family protein -
  FZE25_RS16940 (FZE25_16640) - 3407445..3408665 (+) 1221 WP_020956419.1 LCP family protein -
  FZE25_RS16945 (FZE25_16645) - 3408772..3409848 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=383711 FZE25_RS16925 WP_003219701.1 3404641..3405330(-) (degU) [Bacillus velezensis strain ONU 553]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=383711 FZE25_RS16925 WP_003219701.1 3404641..3405330(-) (degU) [Bacillus velezensis strain ONU 553]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment