Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   HC659_RS05035 Genome accession   NZ_CP051465
Coordinates   987641..988288 (+) Length   215 a.a.
NCBI ID   WP_085186395.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982641..993288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS05020 (HC659_09950) glpD 982812..984479 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  HC659_RS05025 (HC659_09960) pgcA 984611..986356 (+) 1746 WP_032721227.1 phosphoglucomutase -
  HC659_RS05030 (HC659_09970) yhcY 986505..987644 (+) 1140 WP_085186397.1 two-component system sensor histidine kinase YhcY -
  HC659_RS05035 (HC659_09980) vraR 987641..988288 (+) 648 WP_085186395.1 two-component system response regulator YhcZ Regulator
  HC659_RS05040 (HC659_09990) yhdA 988285..988809 (+) 525 WP_085186393.1 FMN-dependent NADPH-azoreductase -
  HC659_RS05045 (HC659_10000) yhdB 988824..989066 (-) 243 WP_003233373.1 YhdB family protein -
  HC659_RS05050 (HC659_10010) yhdC 989267..989590 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  HC659_RS05055 (HC659_10020) lytF 989632..991098 (-) 1467 WP_032721232.1 peptidoglycan endopeptidase LytF -
  HC659_RS05060 (HC659_10030) nsrR 991251..991691 (-) 441 WP_003245378.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=383685 HC659_RS05035 WP_085186395.1 987641..988288(+) (vraR) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=383685 HC659_RS05035 WP_085186395.1 987641..988288(+) (vraR) [Bacillus subtilis subsp. subtilis strain UCMB5121]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCGGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment